Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Lsp1-211ENSMUST00000149521 1910 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Sf3b1Q99NB9 Vmn1r45-206ENSMUST00000227977 3297 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
Sf3b1Q99NB9 Mtmr10-201ENSMUST00000032736 5205 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sf3b1Q99NB9 Kcnv2-201ENSMUST00000056708 5108 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sf3b1Q99NB9 Cpa5-202ENSMUST00000115138 1778 ntTSL 5 BASIC12.33□□□□□ -0.44
Sf3b1Q99NB9 Tnfrsf13b-201ENSMUST00000010286 2556 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sf3b1Q99NB9 Polr1b-201ENSMUST00000028874 2769 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Sf3b1Q99NB9 Pik3cd-206ENSMUST00000122059 4832 ntAPPRIS ALT1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sf3b1Q99NB9 Tmem25-202ENSMUST00000114705 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sf3b1Q99NB9 Gfap-201ENSMUST00000067444 2648 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sf3b1Q99NB9 Spdye4a-201ENSMUST00000085733 1819 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sf3b1Q99NB9 Enpp7-202ENSMUST00000106273 1408 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Sf3b1Q99NB9 Arsa-202ENSMUST00000165199 3492 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sf3b1Q99NB9 Zscan29-201ENSMUST00000079024 2465 ntTSL 5 BASIC12.33□□□□□ -0.44
Sf3b1Q99NB9 Maged2-202ENSMUST00000112697 1851 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sf3b1Q99NB9 Gm37165-201ENSMUST00000193815 1463 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Sf3b1Q99NB9 Gm44086-201ENSMUST00000203251 2349 ntBASIC12.33□□□□□ -0.44
Sf3b1Q99NB9 Jak3-201ENSMUST00000051995 4019 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sf3b1Q99NB9 Tcea3-201ENSMUST00000102533 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sf3b1Q99NB9 Bri3-202ENSMUST00000110695 669 ntTSL 2 BASIC12.33□□□□□ -0.44
Sf3b1Q99NB9 Gm12856-201ENSMUST00000119471 1293 ntBASIC12.33□□□□□ -0.44
Sf3b1Q99NB9 Gm11244-201ENSMUST00000121243 237 ntBASIC12.33□□□□□ -0.44
Sf3b1Q99NB9 Cdpf1-205ENSMUST00000150995 566 ntAPPRIS P1 TSL 3 BASIC12.33□□□□□ -0.44
Sf3b1Q99NB9 Gzmc-201ENSMUST00000015585 894 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sf3b1Q99NB9 Gm22442-201ENSMUST00000157256 144 ntBASIC12.33□□□□□ -0.44
Sf3b1Q99NB9 Rps28-203ENSMUST00000173019 437 ntAPPRIS P1 TSL 3 BASIC12.33□□□□□ -0.44
Sf3b1Q99NB9 Gm20442-201ENSMUST00000174630 492 ntTSL 3 BASIC12.33□□□□□ -0.44
Sf3b1Q99NB9 Ly6c1-202ENSMUST00000179762 838 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sf3b1Q99NB9 3110031N09Rik-201ENSMUST00000201115 326 ntBASIC12.33□□□□□ -0.44
Sf3b1Q99NB9 AC164105.2-201ENSMUST00000215484 524 ntTSL 5 BASIC12.33□□□□□ -0.44
Sf3b1Q99NB9 Gm40652-201ENSMUST00000218944 895 ntTSL 5 BASIC12.33□□□□□ -0.44
Sf3b1Q99NB9 CT009546.1-201ENSMUST00000222573 1120 ntBASIC12.33□□□□□ -0.44
Sf3b1Q99NB9 Rnf183-201ENSMUST00000079420 573 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
Sf3b1Q99NB9 9330199G10Rik-202ENSMUST00000221607 1728 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Sf3b1Q99NB9 Itpr3-201ENSMUST00000049308 8990 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Qrsl1-201ENSMUST00000020012 1981 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Grm7-202ENSMUST00000172951 4197 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Rab30-202ENSMUST00000107179 1304 ntTSL 5 BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Tgfbr1-202ENSMUST00000044234 2861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Gm13848-202ENSMUST00000211663 1560 ntTSL 5 BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Wdr92-201ENSMUST00000046955 2002 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Cd276-202ENSMUST00000165365 3603 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Trim45-204ENSMUST00000134993 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Rabep1-203ENSMUST00000100928 3860 ntTSL 5 BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Axl-202ENSMUST00000085948 3899 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Rgs6-211ENSMUST00000191107 1621 ntTSL 5 BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Dcaf11-203ENSMUST00000117701 2311 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Zfp341-201ENSMUST00000081926 3299 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Rnf6-201ENSMUST00000067837 2388 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Traf7-201ENSMUST00000070777 2384 ntTSL 5 BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Herc3-201ENSMUST00000031823 3596 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Oc90-202ENSMUST00000079776 1670 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Cdh18-204ENSMUST00000165614 2162 ntTSL 5 BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Pink1-202ENSMUST00000105816 1465 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Bbip1-201ENSMUST00000135402 2488 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Duox2-201ENSMUST00000053734 5744 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Trim56-201ENSMUST00000054384 9279 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Pmp22-202ENSMUST00000108700 733 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Gm15615-201ENSMUST00000118876 198 ntBASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Psma1-203ENSMUST00000135570 960 ntTSL 3 BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Mir1956-201ENSMUST00000157748 65 ntBASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Gm7741-201ENSMUST00000181445 989 ntBASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Gm8492-201ENSMUST00000182375 987 ntBASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Psmb6-201ENSMUST00000018430 798 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Eef1b2-209ENSMUST00000188524 681 ntTSL 3 BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Gm37905-201ENSMUST00000195310 341 ntBASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Folr2-203ENSMUST00000210598 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 1110019B22Rik-202ENSMUST00000218396 989 ntTSL 5 BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 AC134328.1-201ENSMUST00000222693 667 ntTSL 2 BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 CT025553.1-201ENSMUST00000226292 299 ntBASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Taar9-201ENSMUST00000041180 1047 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 BC048507-201ENSMUST00000078471 600 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 1810009A15Rik-201ENSMUST00000096251 806 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Cacna1g-205ENSMUST00000107786 7984 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Camta2-204ENSMUST00000108545 4377 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Camta2-206ENSMUST00000120261 4398 ntTSL 5 BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Ptcd3-201ENSMUST00000082094 2581 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Epb41l2-204ENSMUST00000217929 3621 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Lyplal1-201ENSMUST00000045388 1578 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sf3b1Q99NB9 Cbfa2t2-202ENSMUST00000099178 3247 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Sf3b1Q99NB9 Ckmt1-201ENSMUST00000000317 1620 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sf3b1Q99NB9 Osbp2-201ENSMUST00000070552 4097 ntAPPRIS P3 TSL 5 BASIC12.31□□□□□ -0.44
Sf3b1Q99NB9 Eng-202ENSMUST00000113272 3021 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sf3b1Q99NB9 Ercc2-201ENSMUST00000062831 3578 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sf3b1Q99NB9 Plxna1-201ENSMUST00000049845 5810 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sf3b1Q99NB9 Speg-201ENSMUST00000087122 10801 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sf3b1Q99NB9 Rbp3-201ENSMUST00000035695 5295 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sf3b1Q99NB9 Zfp853-203ENSMUST00000212715 3133 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Sf3b1Q99NB9 Ppp1r10-202ENSMUST00000087211 4255 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Sf3b1Q99NB9 Tcf25-202ENSMUST00000108840 2582 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sf3b1Q99NB9 Hk1-205ENSMUST00000130422 2916 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Sf3b1Q99NB9 Gm15997-201ENSMUST00000202188 1491 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Sf3b1Q99NB9 Lgr5-206ENSMUST00000172806 2652 ntTSL 5 BASIC12.31□□□□□ -0.44
Sf3b1Q99NB9 Alg13-202ENSMUST00000070801 1802 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sf3b1Q99NB9 Fetub-204ENSMUST00000170805 1508 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sf3b1Q99NB9 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Sf3b1Q99NB9 Tex9-209ENSMUST00000184125 2794 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 70.7 ms