Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Crispld2-201ENSMUST00000034282 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Nnt-203ENSMUST00000109204 3198 ntTSL 5 BASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Rnf133-201ENSMUST00000063548 1308 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Mthfd1l-202ENSMUST00000117291 3669 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Nek1-208ENSMUST00000211256 4810 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Gm37122-201ENSMUST00000195313 1567 ntBASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Ddo-202ENSMUST00000213442 2408 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Krtap4-8-201ENSMUST00000107439 983 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Rps10-202ENSMUST00000114881 604 ntAPPRIS P1 TSL 3 BASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Gm12165-201ENSMUST00000117047 342 ntBASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Gm10320-201ENSMUST00000170205 527 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Gm19353-201ENSMUST00000184561 445 ntBASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Gm28345-201ENSMUST00000188769 1139 ntTSL 5 BASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Gm28970-201ENSMUST00000191098 1139 ntTSL 5 BASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Gm7207-201ENSMUST00000211575 1067 ntBASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Rps12-208ENSMUST00000220070 494 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Larp7-201ENSMUST00000029588 2121 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Ginm1-202ENSMUST00000065124 300 ntBASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Amtn-201ENSMUST00000073363 1022 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Olfr959-201ENSMUST00000079178 1055 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Gm5965-201ENSMUST00000009191 588 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Tagln3-201ENSMUST00000096057 1240 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Tmx3-201ENSMUST00000025515 4611 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Ubap1-201ENSMUST00000072866 3456 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Vezf1-201ENSMUST00000018521 4583 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Lbh-201ENSMUST00000024857 3064 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Amigo3-201ENSMUST00000085060 2543 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Slc6a21-201ENSMUST00000085364 1732 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Tnk1-201ENSMUST00000001626 2778 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Msantd1-201ENSMUST00000050535 2793 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Nup160-201ENSMUST00000057481 5684 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Pom121l2-201ENSMUST00000017126 2960 ntAPPRIS P4 BASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Palld-204ENSMUST00000121785 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Pou4f2-201ENSMUST00000034115 3204 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Olfr56-203ENSMUST00000179282 1935 ntTSL 5 BASIC13.98□□□□□ -0.17
Brf1Q8CFK2 Abi1-209ENSMUST00000140164 3403 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Brf1Q8CFK2 Zfp597-201ENSMUST00000090522 5668 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Brf1Q8CFK2 Gja8-201ENSMUST00000062944 6940 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Brf1Q8CFK2 Gm10681-202ENSMUST00000178221 1605 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
Brf1Q8CFK2 Ddx11-205ENSMUST00000224497 4141 ntAPPRIS ALT2 BASIC13.97□□□□□ -0.17
Brf1Q8CFK2 Lrrc74b-201ENSMUST00000023442 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Brf1Q8CFK2 Cln3-201ENSMUST00000032962 2386 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Brf1Q8CFK2 Dntt-201ENSMUST00000051806 2128 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Brf1Q8CFK2 Spem2-201ENSMUST00000056941 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Brf1Q8CFK2 Gabre-201ENSMUST00000064780 4306 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Brf1Q8CFK2 Pja1-201ENSMUST00000036354 2563 ntAPPRIS P4 TSL 1 (best) BASIC13.97□□□□□ -0.17
Brf1Q8CFK2 Gcnt7-201ENSMUST00000099060 2220 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Brf1Q8CFK2 BC024139-202ENSMUST00000089654 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Brf1Q8CFK2 Map2k7-205ENSMUST00000110996 1188 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Brf1Q8CFK2 Lamr1-ps1-201ENSMUST00000119759 874 ntBASIC13.97□□□□□ -0.17
Brf1Q8CFK2 B9d1os-201ENSMUST00000137010 674 ntBASIC13.97□□□□□ -0.17
Brf1Q8CFK2 4931406G06Rik-201ENSMUST00000147848 1252 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Brf1Q8CFK2 Ly6g5b-202ENSMUST00000172854 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Brf1Q8CFK2 Gm6108-201ENSMUST00000208365 367 ntBASIC13.97□□□□□ -0.17
Brf1Q8CFK2 Pbld1-204ENSMUST00000219045 602 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Brf1Q8CFK2 Gm6781-201ENSMUST00000038304 1242 ntBASIC13.97□□□□□ -0.17
Brf1Q8CFK2 Gm8420-201ENSMUST00000097103 598 ntBASIC13.97□□□□□ -0.17
Brf1Q8CFK2 4933406C10Rik-201ENSMUST00000180391 1451 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Brf1Q8CFK2 Coro6-204ENSMUST00000102493 2804 ntAPPRIS ALT1 TSL 5 BASIC13.97□□□□□ -0.17
Brf1Q8CFK2 Cacng5-201ENSMUST00000039071 3705 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Brf1Q8CFK2 Fbxl12os-203ENSMUST00000138471 2127 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Brf1Q8CFK2 Szrd1-203ENSMUST00000102487 3244 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Brf1Q8CFK2 Ubxn10-201ENSMUST00000105809 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Brf1Q8CFK2 Gm21319-201ENSMUST00000164517 1863 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Brf1Q8CFK2 Metap2-208ENSMUST00000181091 1876 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Brf1Q8CFK2 4930432B10Rik-201ENSMUST00000181688 2085 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Brf1Q8CFK2 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Brf1Q8CFK2 Pygo2-202ENSMUST00000107413 2911 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Brf1Q8CFK2 AC122811.1-201ENSMUST00000222257 2921 ntBASIC13.97□□□□□ -0.17
Brf1Q8CFK2 Zbtb6-202ENSMUST00000112932 5077 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
Brf1Q8CFK2 Gmeb1-201ENSMUST00000030733 2485 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Brf1Q8CFK2 Cacna1c-203ENSMUST00000112790 7631 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Brf1Q8CFK2 Zcchc11-202ENSMUST00000097925 5865 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Brf1Q8CFK2 4931429L15Rik-201ENSMUST00000159565 2037 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
Brf1Q8CFK2 Lnx2-201ENSMUST00000016664 4557 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Brf1Q8CFK2 Dglucy-202ENSMUST00000110069 3058 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Brf1Q8CFK2 Map7d2-202ENSMUST00000112470 1350 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Brf1Q8CFK2 Poc1a-211ENSMUST00000217213 1398 ntTSL 5 BASIC13.96□□□□□ -0.17
Brf1Q8CFK2 Crym-201ENSMUST00000033198 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Brf1Q8CFK2 Npbwr1-201ENSMUST00000044180 3692 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
Brf1Q8CFK2 Sept11-201ENSMUST00000074733 5028 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
Brf1Q8CFK2 Gprc5d-202ENSMUST00000111922 1317 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
Brf1Q8CFK2 Zp3-201ENSMUST00000005073 1323 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Brf1Q8CFK2 Col18a1-203ENSMUST00000105409 4791 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Brf1Q8CFK2 Gm43102-201ENSMUST00000201004 2324 ntBASIC13.96□□□□□ -0.17
Brf1Q8CFK2 Ctnnal1-201ENSMUST00000045142 3664 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Brf1Q8CFK2 Trpc6-201ENSMUST00000050433 3259 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Brf1Q8CFK2 Phactr1-206ENSMUST00000131942 2056 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Brf1Q8CFK2 A130010J15Rik-204ENSMUST00000161235 2097 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Brf1Q8CFK2 Olfr1258-202ENSMUST00000111516 936 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
Brf1Q8CFK2 Gm13045-201ENSMUST00000119019 712 ntBASIC13.96□□□□□ -0.17
Brf1Q8CFK2 Uox-202ENSMUST00000121133 768 ntTSL 5 BASIC13.96□□□□□ -0.17
Brf1Q8CFK2 Gm24844-201ENSMUST00000158679 127 ntBASIC13.96□□□□□ -0.17
Brf1Q8CFK2 Ccl19-ps3-201ENSMUST00000179634 324 ntBASIC13.96□□□□□ -0.17
Brf1Q8CFK2 Gm12407-201ENSMUST00000180219 324 ntBASIC13.96□□□□□ -0.17
Brf1Q8CFK2 Gm19705-203ENSMUST00000181491 678 ntTSL 5 BASIC13.96□□□□□ -0.17
Brf1Q8CFK2 Gm28287-201ENSMUST00000186612 546 ntTSL 5 BASIC13.96□□□□□ -0.17
Brf1Q8CFK2 Gm21976-204ENSMUST00000186911 528 ntTSL 5 BASIC13.96□□□□□ -0.17
Brf1Q8CFK2 Mir124-2hg-207ENSMUST00000189868 535 ntTSL 2 BASIC13.96□□□□□ -0.17
Brf1Q8CFK2 Mllt11-204ENSMUST00000198948 793 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 48 ms