Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Gm9796-201ENSMUST00000062249 2250 ntBASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 Rsad1-201ENSMUST00000040487 4143 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 Clspn-201ENSMUST00000048391 5027 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 4933440M02Rik-202ENSMUST00000205794 1601 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 Ckmt1-201ENSMUST00000000317 1620 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 Btrc-209ENSMUST00000224478 2194 ntBASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 Gm12015-201ENSMUST00000117065 843 ntBASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 Gm11985-201ENSMUST00000122910 1007 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 Gm15891-201ENSMUST00000127307 611 ntTSL 5 BASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 Pabpc1l2a-ps-201ENSMUST00000128361 513 ntBASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 4930483J18Rik-202ENSMUST00000138715 1093 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 Gm13133-201ENSMUST00000143888 736 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 Gm8494-201ENSMUST00000178171 1233 ntBASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 Ank3-234ENSMUST00000182993 1233 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 Gm27552-201ENSMUST00000183351 62 ntBASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 Gm27844-201ENSMUST00000183613 62 ntBASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 Abhd14a-201ENSMUST00000048685 1256 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 Ubxn6-201ENSMUST00000019722 2949 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 Adora1-203ENSMUST00000169927 4581 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 Atp6v1d-201ENSMUST00000021536 3667 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 Fads6-201ENSMUST00000056153 4951 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 Dsp-201ENSMUST00000124830 9592 ntAPPRIS P2 TSL 5 BASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 Ywhaz-203ENSMUST00000110361 2285 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 Prpf8-201ENSMUST00000018449 7442 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 Sept9-202ENSMUST00000093907 3616 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 Entpd5-203ENSMUST00000110272 4972 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 Nlrp6-203ENSMUST00000183845 4436 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 Ces3b-201ENSMUST00000074403 1907 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 Adamts1-201ENSMUST00000023610 4884 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 Gm13135-201ENSMUST00000117628 3121 ntBASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 D930020B18Rik-201ENSMUST00000120642 3335 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Sh3rf1Q69ZI1 Oxsm-202ENSMUST00000112624 1586 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Itgb2-201ENSMUST00000000299 2970 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Csgalnact1-203ENSMUST00000130214 3029 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Slc7a3-201ENSMUST00000073927 2232 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Cyyr1-201ENSMUST00000114174 5464 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Mroh8-202ENSMUST00000143663 3460 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Lin52-201ENSMUST00000137170 2270 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Btbd9-202ENSMUST00000168787 6857 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Ripk3-201ENSMUST00000022830 1892 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Plcxd3-201ENSMUST00000061925 1851 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Btnl1-201ENSMUST00000080254 1861 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Pacsin1-201ENSMUST00000045896 4190 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Cyb5r3-202ENSMUST00000162178 2547 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Katnal2-207ENSMUST00000137354 1482 ntTSL 5 BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Pak6-201ENSMUST00000099557 4411 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Smim1-213ENSMUST00000182151 5091 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Dixdc1-204ENSMUST00000118707 989 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 BC026585-202ENSMUST00000119891 1125 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Gm10714-201ENSMUST00000131346 874 ntTSL 2 BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Sncb-202ENSMUST00000134110 722 ntAPPRIS P1 TSL 3 BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Ccdc28a-203ENSMUST00000173243 590 ntTSL 5 BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Gm5523-201ENSMUST00000180415 997 ntBASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Ccl4-201ENSMUST00000019074 660 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Gm44100-201ENSMUST00000204329 436 ntBASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 AC025913.2-202ENSMUST00000219248 605 ntTSL 5 BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Net1-206ENSMUST00000222504 447 ntTSL 3 BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Zfp706-203ENSMUST00000226453 517 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Fam241b-201ENSMUST00000027719 771 ntTSL 3 BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 C1qb-201ENSMUST00000046384 1088 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Ercc8-201ENSMUST00000054835 2111 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Rab13-201ENSMUST00000065418 1107 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Mill2-201ENSMUST00000072386 1121 ntAPPRIS P4 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Msantd1-201ENSMUST00000050535 2793 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Pdxk-201ENSMUST00000041616 5124 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Als2cl-206ENSMUST00000155014 5150 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Cdc42ep4-201ENSMUST00000053536 3008 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Tex45-203ENSMUST00000161680 1526 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Slc38a8-201ENSMUST00000036748 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Slc22a14-201ENSMUST00000093775 2213 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Odf2-209ENSMUST00000113764 2450 ntAPPRIS P3 TSL 5 BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Rxfp2-206ENSMUST00000201612 2470 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Srebf1-201ENSMUST00000020846 4299 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Gm8146-201ENSMUST00000192106 1847 ntBASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Pitpnm2-201ENSMUST00000086123 6620 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Acox3-203ENSMUST00000114237 2956 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sh3rf1Q69ZI1 Gm8155-201ENSMUST00000216363 1612 ntBASIC11.78□□□□□ -0.52
Sh3rf1Q69ZI1 AC154314.2-201ENSMUST00000223677 3502 ntBASIC11.78□□□□□ -0.52
Sh3rf1Q69ZI1 Celf4-201ENSMUST00000025117 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sh3rf1Q69ZI1 Cxcl12-203ENSMUST00000112871 3132 ntAPPRIS P4 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sh3rf1Q69ZI1 Trpv1-203ENSMUST00000108470 2667 ntTSL 5 BASIC11.78□□□□□ -0.52
Sh3rf1Q69ZI1 Cd79a-201ENSMUST00000003469 1457 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sh3rf1Q69ZI1 Zc3h6-202ENSMUST00000110320 4916 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
Sh3rf1Q69ZI1 H2-Q1-202ENSMUST00000105041 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sh3rf1Q69ZI1 Elavl2-207ENSMUST00000107118 3797 ntTSL 5 BASIC11.78□□□□□ -0.52
Sh3rf1Q69ZI1 Tyw1-201ENSMUST00000040213 3044 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sh3rf1Q69ZI1 Plg-201ENSMUST00000014578 2755 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sh3rf1Q69ZI1 Ces5a-203ENSMUST00000212009 2042 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sh3rf1Q69ZI1 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC11.78□□□□□ -0.52
Sh3rf1Q69ZI1 Gltp-202ENSMUST00000112212 799 ntTSL 5 BASIC11.78□□□□□ -0.52
Sh3rf1Q69ZI1 Gsto2-202ENSMUST00000120645 1277 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sh3rf1Q69ZI1 Gm12690-201ENSMUST00000132108 354 ntTSL 3 BASIC11.78□□□□□ -0.52
Sh3rf1Q69ZI1 Gm12130-201ENSMUST00000133599 639 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 64.8 ms