Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Arid4a-201ENSMUST00000046305 4998 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
Traf1P39428 Mmel1-204ENSMUST00000105635 2592 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
Traf1P39428 6430571L13Rik-201ENSMUST00000042581 2599 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Traf1P39428 Fbxo39-201ENSMUST00000108504 1708 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
Traf1P39428 Myf5-201ENSMUST00000000445 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Traf1P39428 Fam177a-201ENSMUST00000177768 3922 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Traf1P39428 9430093N23Rik-201ENSMUST00000152494 515 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Traf1P39428 Gm22138-201ENSMUST00000158748 128 ntBASIC13.48□□□□□ -0.25
Traf1P39428 Gm6485-201ENSMUST00000160676 439 ntBASIC13.48□□□□□ -0.25
Traf1P39428 Gm9358-201ENSMUST00000183067 927 ntBASIC13.48□□□□□ -0.25
Traf1P39428 Mir7076-201ENSMUST00000183519 74 ntBASIC13.48□□□□□ -0.25
Traf1P39428 Mir8093-201ENSMUST00000185043 137 ntBASIC13.48□□□□□ -0.25
Traf1P39428 Gm3551-201ENSMUST00000190750 664 ntBASIC13.48□□□□□ -0.25
Traf1P39428 Gm9136-201ENSMUST00000193368 454 ntBASIC13.48□□□□□ -0.25
Traf1P39428 4930447N08Rik-203ENSMUST00000198879 1157 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Traf1P39428 Gm44980-201ENSMUST00000205826 314 ntBASIC13.48□□□□□ -0.25
Traf1P39428 Nkg7-203ENSMUST00000206741 686 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Traf1P39428 Gm10318-202ENSMUST00000217996 639 ntTSL 5 BASIC13.48□□□□□ -0.25
Traf1P39428 Gm40709-203ENSMUST00000219695 973 ntTSL 5 BASIC13.48□□□□□ -0.25
Traf1P39428 AC129219.2-201ENSMUST00000224324 701 ntBASIC13.48□□□□□ -0.25
Traf1P39428 Tex35-201ENSMUST00000027884 909 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Traf1P39428 Defb36-201ENSMUST00000058086 468 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Traf1P39428 Sod2-201ENSMUST00000007012 3824 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Traf1P39428 Snora73b-201ENSMUST00000083419 205 ntBASIC13.48□□□□□ -0.25
Traf1P39428 Actg-ps1-201ENSMUST00000099636 1124 ntBASIC13.48□□□□□ -0.25
Traf1P39428 Rbm39-201ENSMUST00000029149 2711 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Traf1P39428 Slc19a1-209ENSMUST00000144234 2309 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Traf1P39428 Tirap-203ENSMUST00000176531 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Traf1P39428 Mier1-205ENSMUST00000106858 4830 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Traf1P39428 Gm15513-201ENSMUST00000140646 1569 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Traf1P39428 Gm2238-201ENSMUST00000192074 3669 ntBASIC13.48□□□□□ -0.25
Traf1P39428 Foxk1-201ENSMUST00000072837 7439 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Traf1P39428 Gm6157-201ENSMUST00000199935 1897 ntBASIC13.48□□□□□ -0.25
Traf1P39428 CT009489.1-201ENSMUST00000227740 1893 ntBASIC13.48□□□□□ -0.25
Traf1P39428 Inip-201ENSMUST00000095063 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Traf1P39428 Crkl-201ENSMUST00000006293 3863 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Traf1P39428 Grin1-205ENSMUST00000114312 3838 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Traf1P39428 Grin1-207ENSMUST00000114317 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Traf1P39428 Rpap1-203ENSMUST00000110793 5458 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
Traf1P39428 Gm13093-201ENSMUST00000126212 2485 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Traf1P39428 Cabp5-201ENSMUST00000005791 1777 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Traf1P39428 Pla2g16-202ENSMUST00000136465 3048 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Traf1P39428 Bmp3-201ENSMUST00000031278 6548 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Traf1P39428 Cib2-201ENSMUST00000041901 1433 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Traf1P39428 Lrrc3-201ENSMUST00000057608 4296 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Traf1P39428 Lgr5-206ENSMUST00000172806 2652 ntTSL 5 BASIC13.47□□□□□ -0.25
Traf1P39428 Ffar1-201ENSMUST00000052700 4175 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
Traf1P39428 A430057M04Rik-201ENSMUST00000169054 3835 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Traf1P39428 Rai1-207ENSMUST00000171108 7125 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Traf1P39428 Bckdk-201ENSMUST00000071056 3405 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Traf1P39428 Abca7-202ENSMUST00000132517 6696 ntAPPRIS P3 TSL 5 BASIC13.47□□□□□ -0.25
Traf1P39428 Tubb4a-201ENSMUST00000071135 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Traf1P39428 1110059E24Rik-201ENSMUST00000038830 1614 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Traf1P39428 Oard1-202ENSMUST00000167180 1324 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Traf1P39428 Fam78a-201ENSMUST00000056406 4107 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Traf1P39428 Tnnt3-211ENSMUST00000105949 955 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
Traf1P39428 Eif5a-206ENSMUST00000108609 849 ntAPPRIS P1 TSL 3 BASIC13.47□□□□□ -0.25
Traf1P39428 Gm12951-201ENSMUST00000150216 434 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Traf1P39428 Wdr53-204ENSMUST00000178573 1153 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Traf1P39428 Gm27438-201ENSMUST00000183480 110 ntBASIC13.47□□□□□ -0.25
Traf1P39428 Gm29418-201ENSMUST00000186162 647 ntTSL 5 BASIC13.47□□□□□ -0.25
Traf1P39428 Gm37299-201ENSMUST00000193951 826 ntBASIC13.47□□□□□ -0.25
Traf1P39428 Gm5542-201ENSMUST00000195485 1089 ntBASIC13.47□□□□□ -0.25
Traf1P39428 Gm8365-201ENSMUST00000197334 648 ntBASIC13.47□□□□□ -0.25
Traf1P39428 Dnajb6-212ENSMUST00000198694 505 ntTSL 3 BASIC13.47□□□□□ -0.25
Traf1P39428 Tsen2-201ENSMUST00000040234 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Traf1P39428 Ifi27-203ENSMUST00000076788 708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Traf1P39428 Hdac5-204ENSMUST00000107152 3788 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
Traf1P39428 Slc35b3-202ENSMUST00000167513 1778 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
Traf1P39428 Mfsd7a-201ENSMUST00000031455 2508 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Traf1P39428 Cacna1g-205ENSMUST00000107786 7984 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Traf1P39428 Cd19-204ENSMUST00000206325 2452 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Traf1P39428 Gm26584-201ENSMUST00000180551 3216 ntTSL 5 BASIC13.47□□□□□ -0.25
Traf1P39428 Timd4-201ENSMUST00000068877 2173 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Traf1P39428 Chmp3-201ENSMUST00000059462 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Traf1P39428 Ptchd3-201ENSMUST00000036690 3194 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Traf1P39428 Arfgap1-202ENSMUST00000108859 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Traf1P39428 Umod-201ENSMUST00000033263 2625 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Traf1P39428 Psmc3-201ENSMUST00000002171 1819 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Traf1P39428 Asrgl1-201ENSMUST00000049948 4195 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Traf1P39428 Tmeff2-202ENSMUST00000114565 2718 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Traf1P39428 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Traf1P39428 Sorcs1-205ENSMUST00000209413 4398 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Traf1P39428 Il21r-201ENSMUST00000033000 2499 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Traf1P39428 Ptpn14-202ENSMUST00000097442 10746 ntAPPRIS P2 TSL 5 BASIC13.46□□□□□ -0.25
Traf1P39428 Mmel1-207ENSMUST00000163732 2935 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Traf1P39428 Krtap4-6-201ENSMUST00000100476 918 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
Traf1P39428 Agbl3-201ENSMUST00000115009 806 ntTSL 5 BASIC13.46□□□□□ -0.25
Traf1P39428 Gm11451-201ENSMUST00000118946 630 ntBASIC13.46□□□□□ -0.25
Traf1P39428 Gm12395-201ENSMUST00000144765 536 ntTSL 5 BASIC13.46□□□□□ -0.25
Traf1P39428 Gm7535-201ENSMUST00000164167 909 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
Traf1P39428 Nlrp5-ps-202ENSMUST00000173220 1294 ntBASIC13.46□□□□□ -0.25
Traf1P39428 Mir7032-201ENSMUST00000185154 79 ntBASIC13.46□□□□□ -0.25
Traf1P39428 Med8-201ENSMUST00000019229 1145 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Traf1P39428 Gm5982-201ENSMUST00000196234 512 ntBASIC13.46□□□□□ -0.25
Traf1P39428 Pmvk-204ENSMUST00000198440 978 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Traf1P39428 Gm35549-202ENSMUST00000203656 1009 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
Traf1P39428 Rln1-201ENSMUST00000044143 745 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Traf1P39428 Gm10775-201ENSMUST00000099425 1203 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Traf1P39428 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 40.5 ms