Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Gm45233-201ENSMUST00000203633 898 ntAPPRIS P5 TSL 5 BASIC9.46□□□□□ -0.9
Sdc1P18828 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
Sdc1P18828 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC9.46□□□□□ -0.9
Sdc1P18828 Gm39404-201ENSMUST00000216350 313 ntBASIC9.46□□□□□ -0.9
Sdc1P18828 Gm8598-201ENSMUST00000221184 836 ntBASIC9.46□□□□□ -0.9
Sdc1P18828 CT009713.10-202ENSMUST00000225734 696 ntBASIC9.46□□□□□ -0.9
Sdc1P18828 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC9.46□□□□□ -0.9
Sdc1P18828 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC9.46□□□□□ -0.9
Sdc1P18828 Aldh1a3-201ENSMUST00000015278 3443 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
Sdc1P18828 Gm34785-201ENSMUST00000222571 4582 ntTSL 5 BASIC9.46□□□□□ -0.9
Sdc1P18828 Htr1d-203ENSMUST00000121571 2426 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
Sdc1P18828 Klhl7-201ENSMUST00000030841 2966 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
Sdc1P18828 Cln3-204ENSMUST00000116269 2487 ntAPPRIS P2 TSL 5 BASIC9.46□□□□□ -0.9
Sdc1P18828 Tfap2b-204ENSMUST00000187754 3023 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
Sdc1P18828 Gm43375-201ENSMUST00000196705 2480 ntBASIC9.46□□□□□ -0.9
Sdc1P18828 Gpr37-202ENSMUST00000200812 3035 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
Sdc1P18828 Lman1-201ENSMUST00000048260 3563 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
Sdc1P18828 Sh3bgrl2-203ENSMUST00000188030 2549 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
Sdc1P18828 Gm13404-201ENSMUST00000156633 1960 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
Sdc1P18828 Ap5z1-201ENSMUST00000038699 3689 ntAPPRIS P2 TSL 1 (best) BASIC9.46□□□□□ -0.9
Sdc1P18828 Oprm1-204ENSMUST00000063036 1427 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
Sdc1P18828 Sox13-203ENSMUST00000144386 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC9.46□□□□□ -0.9
Sdc1P18828 Col9a1-201ENSMUST00000054588 3834 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
Sdc1P18828 Sez6l-206ENSMUST00000212758 2664 ntTSL 5 BASIC9.46□□□□□ -0.9
Sdc1P18828 Rnpc3-201ENSMUST00000092154 3888 ntAPPRIS P3 TSL 1 (best) BASIC9.46□□□□□ -0.9
Sdc1P18828 Gm11735-201ENSMUST00000106377 1581 ntBASIC9.46□□□□□ -0.9
Sdc1P18828 Ifit1bl1-202ENSMUST00000168254 2215 ntAPPRIS ALT2 TSL 2 BASIC9.46□□□□□ -0.9
Sdc1P18828 AI593442-201ENSMUST00000098768 5615 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Sdc1P18828 5033403F01Rik-201ENSMUST00000181376 1678 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
Sdc1P18828 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Sdc1P18828 Lcorl-205ENSMUST00000121573 2378 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
Sdc1P18828 Abcb8-203ENSMUST00000115077 3074 ntAPPRIS P1 TSL 5 BASIC9.45□□□□□ -0.9
Sdc1P18828 Itgb1bp1-206ENSMUST00000173729 1701 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Sdc1P18828 Oas1h-201ENSMUST00000072476 1703 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Sdc1P18828 4732490B19Rik-201ENSMUST00000130373 2446 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
Sdc1P18828 Gm11131-201ENSMUST00000113886 3122 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
Sdc1P18828 Tuft1-201ENSMUST00000006123 2631 ntAPPRIS P3 TSL 1 (best) BASIC9.45□□□□□ -0.9
Sdc1P18828 Pde6c-202ENSMUST00000112329 2895 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
Sdc1P18828 Ighmbp2-201ENSMUST00000025751 3720 ntAPPRIS P2 TSL 1 (best) BASIC9.45□□□□□ -0.9
Sdc1P18828 St5-201ENSMUST00000077909 4612 ntAPPRIS P4 TSL 1 (best) BASIC9.45□□□□□ -0.9
Sdc1P18828 Gm8213-201ENSMUST00000118191 441 ntBASIC9.45□□□□□ -0.9
Sdc1P18828 Gm14822-201ENSMUST00000122247 291 ntBASIC9.45□□□□□ -0.9
Sdc1P18828 Gm12367-202ENSMUST00000146909 2105 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
Sdc1P18828 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC9.45□□□□□ -0.9
Sdc1P18828 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
Sdc1P18828 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC9.45□□□□□ -0.9
Sdc1P18828 Proscos-202ENSMUST00000178990 666 ntBASIC9.45□□□□□ -0.9
Sdc1P18828 Nat8f7-202ENSMUST00000179613 686 ntAPPRIS P1 BASIC9.45□□□□□ -0.9
Sdc1P18828 D930030I03Rik-201ENSMUST00000180735 920 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
Sdc1P18828 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Sdc1P18828 Gm37497-201ENSMUST00000195830 798 ntBASIC9.45□□□□□ -0.9
Sdc1P18828 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC9.45□□□□□ -0.9
Sdc1P18828 Gm45925-201ENSMUST00000218882 744 ntBASIC9.45□□□□□ -0.9
Sdc1P18828 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC9.45□□□□□ -0.9
Sdc1P18828 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Sdc1P18828 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC9.45□□□□□ -0.9
Sdc1P18828 AC159621.2-201ENSMUST00000223519 1326 ntBASIC9.45□□□□□ -0.9
Sdc1P18828 Gm45041-201ENSMUST00000207366 3108 ntBASIC9.45□□□□□ -0.9
Sdc1P18828 Bace1-202ENSMUST00000078111 4041 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
Sdc1P18828 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC9.45□□□□□ -0.9
Sdc1P18828 Card14-202ENSMUST00000106250 4206 ntAPPRIS P1 TSL 5 BASIC9.45□□□□□ -0.9
Sdc1P18828 Ank2-214ENSMUST00000182547 2428 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
Sdc1P18828 Gm13142-201ENSMUST00000117213 1453 ntBASIC9.45□□□□□ -0.9
Sdc1P18828 A130077B15Rik-201ENSMUST00000219429 2547 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
Sdc1P18828 Lnx2-201ENSMUST00000016664 4557 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Sdc1P18828 Col4a6-201ENSMUST00000101205 6648 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Sdc1P18828 4931406C07Rik-201ENSMUST00000034414 2562 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Sdc1P18828 Gm45218-201ENSMUST00000205533 1678 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
Sdc1P18828 Gm46355-201ENSMUST00000221434 1671 ntTSL 5 BASIC9.45□□□□□ -0.9
Sdc1P18828 Rfesd-201ENSMUST00000050997 2807 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Sdc1P18828 Mfsd13b-205ENSMUST00000216241 1761 ntAPPRIS ALT2 TSL 5 BASIC9.45□□□□□ -0.9
Sdc1P18828 Kmt2a-202ENSMUST00000114689 16470 ntAPPRIS ALT2 TSL 5 BASIC9.45□□□□□ -0.9
Sdc1P18828 Uaca-202ENSMUST00000214354 4417 ntAPPRIS ALT2 TSL 5 BASIC9.45□□□□□ -0.9
Sdc1P18828 Rnf2-201ENSMUST00000076110 3160 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Sdc1P18828 Vmn1r38-202ENSMUST00000227493 3486 ntAPPRIS P1 BASIC9.44□□□□□ -0.9
Sdc1P18828 Klhl3-201ENSMUST00000091583 6871 ntTSL 5 BASIC9.44□□□□□ -0.9
Sdc1P18828 Arhgap6-204ENSMUST00000112129 2487 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
Sdc1P18828 Serpine1-202ENSMUST00000077523 2697 ntAPPRIS P1 TSL 5 BASIC9.44□□□□□ -0.9
Sdc1P18828 Mical2-202ENSMUST00000050149 6669 ntAPPRIS P3 TSL 1 (best) BASIC9.44□□□□□ -0.9
Sdc1P18828 Gm12928-201ENSMUST00000117115 573 ntBASIC9.44□□□□□ -0.9
Sdc1P18828 Gm12463-201ENSMUST00000118271 849 ntBASIC9.44□□□□□ -0.9
Sdc1P18828 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC9.44□□□□□ -0.9
Sdc1P18828 Gm10156-201ENSMUST00000122364 462 ntBASIC9.44□□□□□ -0.9
Sdc1P18828 Gm16001-201ENSMUST00000127989 875 ntTSL 3 BASIC9.44□□□□□ -0.9
Sdc1P18828 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Sdc1P18828 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC9.44□□□□□ -0.9
Sdc1P18828 Rprl1-201ENSMUST00000158050 327 ntBASIC9.44□□□□□ -0.9
Sdc1P18828 6030498E09Rik-202ENSMUST00000168144 510 ntAPPRIS P1 TSL 5 BASIC9.44□□□□□ -0.9
Sdc1P18828 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
Sdc1P18828 Gm42612-201ENSMUST00000197986 623 ntBASIC9.44□□□□□ -0.9
Sdc1P18828 Gm44405-201ENSMUST00000198952 126 ntBASIC9.44□□□□□ -0.9
Sdc1P18828 Gm43170-201ENSMUST00000199827 612 ntBASIC9.44□□□□□ -0.9
Sdc1P18828 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC9.44□□□□□ -0.9
Sdc1P18828 Gm4598-201ENSMUST00000206756 1080 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
Sdc1P18828 Gm45572-201ENSMUST00000211774 750 ntTSL 5 BASIC9.44□□□□□ -0.9
Sdc1P18828 Gm7183-201ENSMUST00000213870 1005 ntBASIC9.44□□□□□ -0.9
Sdc1P18828 AC125117.1-201ENSMUST00000228121 468 ntBASIC9.44□□□□□ -0.9
Sdc1P18828 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Sdc1P18828 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Sdc1P18828 1700028J19Rik-201ENSMUST00000037220 1245 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Retrieved 100 of 76,532 protein–RNA pairs in 57.2 ms