Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gm37513-201ENSMUST00000194830 2268 ntBASIC9.31□□□□□ -0.92
Hoxd3P09027 Gm38378-201ENSMUST00000195153 2268 ntBASIC9.31□□□□□ -0.92
Hoxd3P09027 Gck-203ENSMUST00000109823 2361 ntTSL 5 BASIC9.31□□□□□ -0.92
Hoxd3P09027 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hoxd3P09027 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hoxd3P09027 Chrdl1-202ENSMUST00000074660 4096 ntAPPRIS P3 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hoxd3P09027 Sf1-208ENSMUST00000131252 4353 ntAPPRIS P4 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hoxd3P09027 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hoxd3P09027 Pdlim5-201ENSMUST00000029941 5016 ntAPPRIS P3 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hoxd3P09027 Lgr5-201ENSMUST00000020350 4714 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hoxd3P09027 Eml5-201ENSMUST00000065716 9482 ntTSL 5 BASIC9.31□□□□□ -0.92
Hoxd3P09027 Rnf14-201ENSMUST00000072376 3038 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hoxd3P09027 Crmp1-201ENSMUST00000031004 2906 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hoxd3P09027 Thsd4-202ENSMUST00000098660 8796 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hoxd3P09027 CT009757.3-201ENSMUST00000223367 2320 ntBASIC9.31□□□□□ -0.92
Hoxd3P09027 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hoxd3P09027 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hoxd3P09027 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hoxd3P09027 BC030500-201ENSMUST00000062978 1605 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Hoxd3P09027 Lrrc18-204ENSMUST00000120951 1511 ntAPPRIS ALT2 TSL 5 BASIC9.31□□□□□ -0.92
Hoxd3P09027 Gm13812-201ENSMUST00000118061 1347 ntBASIC9.31□□□□□ -0.92
Hoxd3P09027 Gm13810-201ENSMUST00000118584 1347 ntBASIC9.31□□□□□ -0.92
Hoxd3P09027 Epb41l2-207ENSMUST00000218903 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hoxd3P09027 Rapgef3-203ENSMUST00000126854 4005 ntAPPRIS P2 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hoxd3P09027 Ly75-202ENSMUST00000112533 6901 ntAPPRIS ALT2 TSL 5 BASIC9.3□□□□□ -0.92
Hoxd3P09027 Kdm1b-201ENSMUST00000037025 4987 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hoxd3P09027 Nfe2l1-210ENSMUST00000167110 3547 ntAPPRIS ALT2 TSL 2 BASIC9.3□□□□□ -0.92
Hoxd3P09027 Cald1-205ENSMUST00000115027 4777 ntTSL 5 BASIC9.3□□□□□ -0.92
Hoxd3P09027 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hoxd3P09027 Phactr1-213ENSMUST00000148891 5307 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
Hoxd3P09027 Krit1-201ENSMUST00000080085 2930 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hoxd3P09027 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC9.3□□□□□ -0.92
Hoxd3P09027 Gm29100-201ENSMUST00000187564 4410 ntBASIC9.3□□□□□ -0.92
Hoxd3P09027 5330413P13Rik-204ENSMUST00000210606 1464 ntTSL 5 BASIC9.3□□□□□ -0.92
Hoxd3P09027 Batf2-201ENSMUST00000045042 1391 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hoxd3P09027 Rgs6-222ENSMUST00000202210 3069 ntAPPRIS ALT2 TSL 5 BASIC9.3□□□□□ -0.92
Hoxd3P09027 Gm23596-201ENSMUST00000104304 132 ntBASIC9.3□□□□□ -0.92
Hoxd3P09027 Lyzl6-202ENSMUST00000107014 802 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hoxd3P09027 Tm2d3-203ENSMUST00000107495 1003 ntAPPRIS P4 TSL 5 BASIC9.3□□□□□ -0.92
Hoxd3P09027 Gm11331-201ENSMUST00000119764 288 ntBASIC9.3□□□□□ -0.92
Hoxd3P09027 Gm14908-201ENSMUST00000120930 1286 ntBASIC9.3□□□□□ -0.92
Hoxd3P09027 Gm14247-201ENSMUST00000120950 237 ntBASIC9.3□□□□□ -0.92
Hoxd3P09027 Gm11450-201ENSMUST00000121144 333 ntBASIC9.3□□□□□ -0.92
Hoxd3P09027 Gm12164-201ENSMUST00000121695 551 ntBASIC9.3□□□□□ -0.92
Hoxd3P09027 Gm25881-201ENSMUST00000157783 103 ntBASIC9.3□□□□□ -0.92
Hoxd3P09027 Chtf8-203ENSMUST00000176090 615 ntTSL 5 BASIC9.3□□□□□ -0.92
Hoxd3P09027 Gm21859-201ENSMUST00000178424 1045 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
Hoxd3P09027 Anapc16-202ENSMUST00000182116 581 ntTSL 3 BASIC9.3□□□□□ -0.92
Hoxd3P09027 Gm28253-201ENSMUST00000186071 712 ntTSL 5 BASIC9.3□□□□□ -0.92
Hoxd3P09027 Gm28351-201ENSMUST00000186261 559 ntTSL 5 BASIC9.3□□□□□ -0.92
Hoxd3P09027 Gm28835-201ENSMUST00000188415 655 ntTSL 5 BASIC9.3□□□□□ -0.92
Hoxd3P09027 Gm29633-207ENSMUST00000190523 737 ntTSL 5 BASIC9.3□□□□□ -0.92
Hoxd3P09027 Gm29264-201ENSMUST00000191240 1264 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
Hoxd3P09027 Gm42629-201ENSMUST00000199063 1102 ntBASIC9.3□□□□□ -0.92
Hoxd3P09027 Atraid-205ENSMUST00000201136 894 ntAPPRIS ALT2 TSL 3 BASIC9.3□□□□□ -0.92
Hoxd3P09027 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hoxd3P09027 Gm42964-201ENSMUST00000202965 382 ntBASIC9.3□□□□□ -0.92
Hoxd3P09027 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
Hoxd3P09027 Lrp1b-212ENSMUST00000204204 798 ntTSL 2 BASIC9.3□□□□□ -0.92
Hoxd3P09027 Gm7238-201ENSMUST00000206467 973 ntBASIC9.3□□□□□ -0.92
Hoxd3P09027 Camsap3-203ENSMUST00000207077 3832 ntAPPRIS ALT2 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hoxd3P09027 Gm7848-201ENSMUST00000210739 718 ntBASIC9.3□□□□□ -0.92
Hoxd3P09027 8030455M16Rik-201ENSMUST00000213014 902 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
Hoxd3P09027 Olfr1449-204ENSMUST00000215325 1149 ntAPPRIS P1 TSL 5 BASIC9.3□□□□□ -0.92
Hoxd3P09027 AC154646.1-201ENSMUST00000225011 1092 ntBASIC9.3□□□□□ -0.92
Hoxd3P09027 Azgp1-201ENSMUST00000035390 1297 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hoxd3P09027 Olfr1152-201ENSMUST00000051058 933 ntAPPRIS P1 BASIC9.3□□□□□ -0.92
Hoxd3P09027 Lce3d-201ENSMUST00000059053 491 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hoxd3P09027 1110025L11Rik-201ENSMUST00000089104 591 ntAPPRIS P1 BASIC9.3□□□□□ -0.92
Hoxd3P09027 Gm21811-201ENSMUST00000096485 930 ntBASIC9.3□□□□□ -0.92
Hoxd3P09027 Gm8038-201ENSMUST00000164674 2044 ntBASIC9.3□□□□□ -0.92
Hoxd3P09027 Cpsf7-201ENSMUST00000038379 3604 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hoxd3P09027 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC9.3□□□□□ -0.92
Hoxd3P09027 Camta2-204ENSMUST00000108545 4377 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
Hoxd3P09027 Camta2-206ENSMUST00000120261 4398 ntTSL 5 BASIC9.3□□□□□ -0.92
Hoxd3P09027 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hoxd3P09027 Snrpn-201ENSMUST00000059305 1932 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hoxd3P09027 1700025G04Rik-201ENSMUST00000044581 9559 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hoxd3P09027 Capn8-202ENSMUST00000168514 2483 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
Hoxd3P09027 Iqsec2-201ENSMUST00000096275 5252 ntAPPRIS P3 TSL 2 BASIC9.3□□□□□ -0.92
Hoxd3P09027 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hoxd3P09027 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC9.3□□□□□ -0.92
Hoxd3P09027 Dgcr8-201ENSMUST00000009321 4320 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hoxd3P09027 Tgfbr2-201ENSMUST00000035014 3476 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hoxd3P09027 Kcna1-201ENSMUST00000055168 4031 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hoxd3P09027 Kcnv2-201ENSMUST00000056708 5108 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hoxd3P09027 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hoxd3P09027 Kif28-202ENSMUST00000211943 2643 ntAPPRIS ALT2 TSL 5 BASIC9.3□□□□□ -0.92
Hoxd3P09027 Rbpsuh-rs3-201ENSMUST00000182751 1441 ntBASIC9.3□□□□□ -0.92
Hoxd3P09027 AC171277.1-201ENSMUST00000216902 1441 ntBASIC9.3□□□□□ -0.92
Hoxd3P09027 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hoxd3P09027 Mpp4-204ENSMUST00000186477 1885 ntAPPRIS ALT2 TSL 5 BASIC9.3□□□□□ -0.92
Hoxd3P09027 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Hoxd3P09027 Gm11685-201ENSMUST00000141559 1332 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
Hoxd3P09027 D930032P07Rik-201ENSMUST00000181393 1314 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
Hoxd3P09027 Gm43341-201ENSMUST00000200104 1308 ntBASIC9.3□□□□□ -0.92
Hoxd3P09027 Olfr139-204ENSMUST00000214111 1311 ntAPPRIS P1 TSL 5 BASIC9.3□□□□□ -0.92
Hoxd3P09027 AC159308.2-201ENSMUST00000213592 2325 ntBASIC9.3□□□□□ -0.92
Hoxd3P09027 Slc7a3-201ENSMUST00000073927 2232 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 Accsl-201ENSMUST00000099690 2224 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Retrieved 100 of 76,532 protein–RNA pairs in 84 ms