Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gm42655-201ENSMUST00000202782 1134 ntBASIC13.71□□□□□ -0.21
Col3a1P08121 Gm35713-201ENSMUST00000210516 199 ntBASIC13.71□□□□□ -0.21
Col3a1P08121 4930449E01Rik-201ENSMUST00000022711 595 ntTSL 2 BASIC13.71□□□□□ -0.21
Col3a1P08121 Rps10-ps1-201ENSMUST00000074353 495 ntBASIC13.71□□□□□ -0.21
Col3a1P08121 Rab7-201ENSMUST00000095048 1275 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Col3a1P08121 Gm37542-201ENSMUST00000192563 2832 ntBASIC13.71□□□□□ -0.21
Col3a1P08121 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
Col3a1P08121 Slc4a9-202ENSMUST00000115694 2861 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
Col3a1P08121 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
Col3a1P08121 Ilvbl-212ENSMUST00000220430 2350 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Col3a1P08121 4932431P20Rik-201ENSMUST00000098602 1340 ntBASIC13.71□□□□□ -0.22
Col3a1P08121 Kctd18-210ENSMUST00000164963 2114 ntTSL 5 BASIC13.71□□□□□ -0.22
Col3a1P08121 Tbc1d24-209ENSMUST00000201301 4261 ntTSL 5 BASIC13.71□□□□□ -0.22
Col3a1P08121 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC13.71□□□□□ -0.22
Col3a1P08121 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Col3a1P08121 Akr1c6-201ENSMUST00000021630 1396 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Col3a1P08121 Paqr5-201ENSMUST00000034817 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Col3a1P08121 Cfb-202ENSMUST00000128767 2751 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Col3a1P08121 Zfp772-201ENSMUST00000074455 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Col3a1P08121 Zfp94-201ENSMUST00000032673 2529 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
Col3a1P08121 Trmt61b-202ENSMUST00000137830 2572 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Col3a1P08121 4930430F08Rik-201ENSMUST00000054471 2564 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col3a1P08121 Traf3ip2-201ENSMUST00000019987 2867 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col3a1P08121 Nop16-201ENSMUST00000026987 1756 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col3a1P08121 2610301B20Rik-202ENSMUST00000101504 2053 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Col3a1P08121 Cttnbp2nl-202ENSMUST00000098763 4834 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col3a1P08121 Sike1-201ENSMUST00000029447 7375 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col3a1P08121 Sgk1-204ENSMUST00000120509 3096 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Col3a1P08121 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col3a1P08121 Ebf3-203ENSMUST00000168203 3724 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col3a1P08121 Hhipl2-201ENSMUST00000065900 2525 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Col3a1P08121 Serinc4-202ENSMUST00000110613 2240 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Col3a1P08121 Il1rn-202ENSMUST00000114485 728 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Col3a1P08121 Mup-ps29-201ENSMUST00000122281 202 ntBASIC13.7□□□□□ -0.22
Col3a1P08121 Dydc1-203ENSMUST00000189865 995 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col3a1P08121 1700088E04Rik-211ENSMUST00000190730 691 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Col3a1P08121 Gm19640-201ENSMUST00000214849 464 ntBASIC13.7□□□□□ -0.22
Col3a1P08121 Olfr335-ps-201ENSMUST00000223545 939 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Col3a1P08121 AC115304.2-201ENSMUST00000226399 332 ntBASIC13.7□□□□□ -0.22
Col3a1P08121 Slc38a3-201ENSMUST00000010208 2585 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col3a1P08121 Fam214b-203ENSMUST00000107957 3234 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Col3a1P08121 Ufd1-201ENSMUST00000005394 1996 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col3a1P08121 Rgs6-207ENSMUST00000186323 1308 ntTSL 5 BASIC13.7□□□□□ -0.22
Col3a1P08121 Smim13-201ENSMUST00000165561 4483 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col3a1P08121 Otop1-202ENSMUST00000114099 3141 ntAPPRIS P5 TSL 5 BASIC13.7□□□□□ -0.22
Col3a1P08121 Tcp10b-202ENSMUST00000116666 2588 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col3a1P08121 Pde6c-201ENSMUST00000025956 2586 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col3a1P08121 Trappc12-201ENSMUST00000020954 3377 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col3a1P08121 Gm20498-203ENSMUST00000166664 2284 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
Col3a1P08121 Kif22-ps-201ENSMUST00000119302 1984 ntBASIC13.69□□□□□ -0.22
Col3a1P08121 Gm43152-201ENSMUST00000202495 1638 ntBASIC13.69□□□□□ -0.22
Col3a1P08121 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col3a1P08121 B230317F23Rik-201ENSMUST00000052189 2472 ntBASIC13.69□□□□□ -0.22
Col3a1P08121 Csrnp1-201ENSMUST00000035101 2906 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col3a1P08121 Nppa-201ENSMUST00000103230 865 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col3a1P08121 Ighv1-81-201ENSMUST00000103548 351 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Col3a1P08121 Rmdn1-202ENSMUST00000108253 806 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col3a1P08121 Snord23-201ENSMUST00000116828 109 ntBASIC13.69□□□□□ -0.22
Col3a1P08121 Gm15036-201ENSMUST00000118880 400 ntBASIC13.69□□□□□ -0.22
Col3a1P08121 Spaca9-202ENSMUST00000124840 699 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col3a1P08121 Gm12756-201ENSMUST00000126294 599 ntTSL 3 BASIC13.69□□□□□ -0.22
Col3a1P08121 Gm16081-201ENSMUST00000155992 684 ntTSL 3 BASIC13.69□□□□□ -0.22
Col3a1P08121 Gm25343-201ENSMUST00000157460 107 ntBASIC13.69□□□□□ -0.22
Col3a1P08121 Gm4982-201ENSMUST00000160440 1098 ntBASIC13.69□□□□□ -0.22
Col3a1P08121 Shisa5-205ENSMUST00000197099 742 ntTSL 3 BASIC13.69□□□□□ -0.22
Col3a1P08121 Hcst-203ENSMUST00000208740 366 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Col3a1P08121 Tex29-205ENSMUST00000209692 884 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Col3a1P08121 Ly86-201ENSMUST00000021860 1134 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col3a1P08121 Gm4604-201ENSMUST00000025040 390 ntBASIC13.69□□□□□ -0.22
Col3a1P08121 Catsperz-201ENSMUST00000057716 781 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col3a1P08121 Tdpoz3-201ENSMUST00000081780 1098 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Col3a1P08121 L3mbtl2-208ENSMUST00000174229 2578 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Col3a1P08121 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC13.69□□□□□ -0.22
Col3a1P08121 Pde4b-203ENSMUST00000097950 2756 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Col3a1P08121 Siglec1-202ENSMUST00000110226 1861 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Col3a1P08121 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Col3a1P08121 Mterf3-201ENSMUST00000021991 1479 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col3a1P08121 Prodh-205ENSMUST00000136776 2041 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Col3a1P08121 Rbm10-202ENSMUST00000082089 2562 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Col3a1P08121 Zdhhc6-205ENSMUST00000224291 2603 ntBASIC13.69□□□□□ -0.22
Col3a1P08121 Parvg-201ENSMUST00000023074 2619 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col3a1P08121 Bmp7-201ENSMUST00000009143 3670 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col3a1P08121 Lipe-208ENSMUST00000206861 3171 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col3a1P08121 Emp1-202ENSMUST00000111907 2763 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col3a1P08121 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col3a1P08121 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col3a1P08121 Lamb2-201ENSMUST00000065014 5629 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col3a1P08121 Gm13351-201ENSMUST00000118087 414 ntBASIC13.68□□□□□ -0.22
Col3a1P08121 Gm15935-201ENSMUST00000141004 607 ntTSL 3 BASIC13.68□□□□□ -0.22
Col3a1P08121 Ins2-208ENSMUST00000162317 297 ntTSL 5 BASIC13.68□□□□□ -0.22
Col3a1P08121 Malat1-205ENSMUST00000174808 656 ntTSL 2 BASIC13.68□□□□□ -0.22
Col3a1P08121 Gm36355-201ENSMUST00000203752 639 ntTSL 3 BASIC13.68□□□□□ -0.22
Col3a1P08121 Park2-210ENSMUST00000218435 865 ntTSL 5 BASIC13.68□□□□□ -0.22
Col3a1P08121 C8g-202ENSMUST00000040042 1150 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col3a1P08121 Spata46-201ENSMUST00000056991 771 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col3a1P08121 Ces3a-201ENSMUST00000093222 2046 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col3a1P08121 Yae1d1-204ENSMUST00000222796 1382 ntTSL 5 BASIC13.68□□□□□ -0.22
Col3a1P08121 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col3a1P08121 Zfp426-202ENSMUST00000115562 3557 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col3a1P08121 Coro2b-201ENSMUST00000048043 3610 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 72.3 ms