Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC9.57□□□□□ -0.88
Hmgb3O54879 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC9.57□□□□□ -0.88
Hmgb3O54879 2310016G11Rik-202ENSMUST00000209111 733 ntTSL 3 BASIC9.57□□□□□ -0.88
Hmgb3O54879 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hmgb3O54879 AC022775.2-201ENSMUST00000227885 646 ntBASIC9.57□□□□□ -0.88
Hmgb3O54879 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hmgb3O54879 Tmem231-201ENSMUST00000034429 2984 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hmgb3O54879 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hmgb3O54879 1700028J19Rik-201ENSMUST00000037220 1245 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hmgb3O54879 Ercc8-201ENSMUST00000054835 2111 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hmgb3O54879 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hmgb3O54879 Tacc2-205ENSMUST00000207282 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hmgb3O54879 Polr2a-201ENSMUST00000058470 6740 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hmgb3O54879 Idi1-201ENSMUST00000169314 3027 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hmgb3O54879 Lin52-201ENSMUST00000137170 2270 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hmgb3O54879 Avpr2-202ENSMUST00000101470 2787 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
Hmgb3O54879 Saxo2-201ENSMUST00000056728 2783 ntAPPRIS P2 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hmgb3O54879 Fndc7-207ENSMUST00000180063 4820 ntAPPRIS ALT2 TSL 5 BASIC9.57□□□□□ -0.88
Hmgb3O54879 AC125409.1-201ENSMUST00000223213 3370 ntBASIC9.57□□□□□ -0.88
Hmgb3O54879 Specc1l-201ENSMUST00000040105 5928 ntTSL 5 BASIC9.57□□□□□ -0.88
Hmgb3O54879 Dpysl4-201ENSMUST00000026551 3552 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hmgb3O54879 Hist1h1d-201ENSMUST00000045301 7425 ntAPPRIS P1 BASIC9.56□□□□□ -0.88
Hmgb3O54879 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hmgb3O54879 Jam3-201ENSMUST00000034472 1942 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hmgb3O54879 Ticam2-201ENSMUST00000070084 2340 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hmgb3O54879 Isl1-201ENSMUST00000036060 2516 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hmgb3O54879 Cxcr5-202ENSMUST00000179828 2824 ntAPPRIS P1 TSL 5 BASIC9.56□□□□□ -0.88
Hmgb3O54879 Cd6-202ENSMUST00000039043 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hmgb3O54879 Gm42602-201ENSMUST00000200288 3224 ntBASIC9.56□□□□□ -0.88
Hmgb3O54879 Sept9-202ENSMUST00000093907 3616 ntAPPRIS ALT2 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hmgb3O54879 Ttll5-202ENSMUST00000040273 4147 ntAPPRIS ALT2 TSL 5 BASIC9.56□□□□□ -0.88
Hmgb3O54879 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC9.56□□□□□ -0.88
Hmgb3O54879 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hmgb3O54879 Gm37131-201ENSMUST00000192502 1561 ntBASIC9.56□□□□□ -0.88
Hmgb3O54879 Rnls-202ENSMUST00000163093 1378 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
Hmgb3O54879 Polr1a-201ENSMUST00000055296 9216 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hmgb3O54879 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC9.56□□□□□ -0.88
Hmgb3O54879 Ghr-203ENSMUST00000110698 1171 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
Hmgb3O54879 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC9.56□□□□□ -0.88
Hmgb3O54879 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC9.56□□□□□ -0.88
Hmgb3O54879 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
Hmgb3O54879 Gm8652-201ENSMUST00000181363 964 ntBASIC9.56□□□□□ -0.88
Hmgb3O54879 Ovol3-201ENSMUST00000189482 731 ntAPPRIS P1 TSL 5 BASIC9.56□□□□□ -0.88
Hmgb3O54879 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC9.56□□□□□ -0.88
Hmgb3O54879 Gm42693-201ENSMUST00000196779 631 ntBASIC9.56□□□□□ -0.88
Hmgb3O54879 Gm42937-201ENSMUST00000197360 752 ntBASIC9.56□□□□□ -0.88
Hmgb3O54879 Gm42980-201ENSMUST00000200582 1028 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
Hmgb3O54879 AC135669.1-201ENSMUST00000213585 412 ntBASIC9.56□□□□□ -0.88
Hmgb3O54879 Rpl10-202ENSMUST00000074085 855 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hmgb3O54879 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC9.56□□□□□ -0.88
Hmgb3O54879 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hmgb3O54879 Ifi27-203ENSMUST00000076788 708 ntAPPRIS ALT2 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hmgb3O54879 Camk2g-201ENSMUST00000071816 3703 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
Hmgb3O54879 Oxct1-201ENSMUST00000110690 3527 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hmgb3O54879 Flcn-203ENSMUST00000102697 3437 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hmgb3O54879 4932443L11Rik-202ENSMUST00000177130 2827 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
Hmgb3O54879 Ablim1-210ENSMUST00000111550 2731 ntAPPRIS ALT2 TSL 5 BASIC9.56□□□□□ -0.88
Hmgb3O54879 Ciapin1-209ENSMUST00000162538 4359 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hmgb3O54879 Rnf20-201ENSMUST00000029989 4154 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hmgb3O54879 Dzip1l-204ENSMUST00000112886 3970 ntAPPRIS ALT2 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hmgb3O54879 Txlng-201ENSMUST00000041370 3862 ntAPPRIS P3 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hmgb3O54879 Atg16l2-201ENSMUST00000120267 6459 ntAPPRIS P2 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hmgb3O54879 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hmgb3O54879 Mog-201ENSMUST00000102665 1704 ntAPPRIS P2 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hmgb3O54879 Trim65-202ENSMUST00000106440 4040 ntTSL 5 BASIC9.56□□□□□ -0.88
Hmgb3O54879 Pphln1-201ENSMUST00000049122 4023 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
Hmgb3O54879 Gm8155-201ENSMUST00000216363 1612 ntBASIC9.56□□□□□ -0.88
Hmgb3O54879 Nfe2l1-212ENSMUST00000169828 3530 ntTSL 2 BASIC9.56□□□□□ -0.88
Hmgb3O54879 Ank3-247ENSMUST00000218680 5500 ntAPPRIS ALT2 TSL 5 BASIC9.56□□□□□ -0.88
Hmgb3O54879 Gm19410-201ENSMUST00000207505 6352 ntAPPRIS P1 TSL 5 BASIC9.56□□□□□ -0.88
Hmgb3O54879 Sptan1-203ENSMUST00000100225 7892 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
Hmgb3O54879 U2af1l4-237ENSMUST00000167042 3007 ntAPPRIS P5 TSL 2 BASIC9.56□□□□□ -0.88
Hmgb3O54879 Tfip11-201ENSMUST00000031288 3560 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
Hmgb3O54879 Kcnh3-201ENSMUST00000041415 3583 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
Hmgb3O54879 Myh4-202ENSMUST00000170942 5912 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
Hmgb3O54879 Ddx56-201ENSMUST00000004507 1956 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
Hmgb3O54879 Gon4l-201ENSMUST00000081695 7440 ntAPPRIS P2 TSL 5 BASIC9.55□□□□□ -0.88
Hmgb3O54879 Gon4l-202ENSMUST00000090942 7443 ntAPPRIS ALT2 TSL 5 BASIC9.55□□□□□ -0.88
Hmgb3O54879 Gm15411-201ENSMUST00000133243 3488 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
Hmgb3O54879 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
Hmgb3O54879 Prrxl1-204ENSMUST00000189022 2985 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
Hmgb3O54879 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC9.55□□□□□ -0.88
Hmgb3O54879 Styxl1-201ENSMUST00000053906 1582 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
Hmgb3O54879 Slc6a9-209ENSMUST00000163288 2107 ntTSL 5 BASIC9.55□□□□□ -0.88
Hmgb3O54879 Gm13142-201ENSMUST00000117213 1453 ntBASIC9.55□□□□□ -0.88
Hmgb3O54879 Gpr149-201ENSMUST00000058535 4222 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
Hmgb3O54879 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC9.55□□□□□ -0.88
Hmgb3O54879 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
Hmgb3O54879 Ddr1-202ENSMUST00000097333 3593 ntAPPRIS ALT2 TSL 1 (best) BASIC9.55□□□□□ -0.88
Hmgb3O54879 Chrnb2-203ENSMUST00000200558 3482 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
Hmgb3O54879 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
Hmgb3O54879 Gm13944-201ENSMUST00000126572 721 ntTSL 2 BASIC9.55□□□□□ -0.88
Hmgb3O54879 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
Hmgb3O54879 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
Hmgb3O54879 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC9.55□□□□□ -0.88
Hmgb3O54879 Gm18018-201ENSMUST00000198273 408 ntBASIC9.55□□□□□ -0.88
Hmgb3O54879 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC9.55□□□□□ -0.88
Hmgb3O54879 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
Hmgb3O54879 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC9.55□□□□□ -0.88
Hmgb3O54879 Cdk19os-201ENSMUST00000044774 534 ntTSL 5 BASIC9.55□□□□□ -0.88
Retrieved 100 of 76,532 protein–RNA pairs in 221.4 ms