Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trim54Q9ERP3 Srsf5-201ENSMUST00000094693 1527 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trim54Q9ERP3 Ttc29-202ENSMUST00000109902 1416 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Trim54Q9ERP3 Pif1-202ENSMUST00000131483 3309 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trim54Q9ERP3 Tmem92-203ENSMUST00000162809 1437 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trim54Q9ERP3 Nrap-203ENSMUST00000095947 5214 ntTSL 5 BASIC12.62□□□□□ -0.39
Trim54Q9ERP3 2900026A02Rik-203ENSMUST00000212276 5864 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Trim54Q9ERP3 B4galt1-201ENSMUST00000030121 3983 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trim54Q9ERP3 Lamp5-201ENSMUST00000057503 1955 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 E2f3-201ENSMUST00000102948 5097 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Tor3a-201ENSMUST00000079625 3285 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Itgal-202ENSMUST00000117762 5222 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Zmym1-202ENSMUST00000106099 2982 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Cbfa2t2-202ENSMUST00000099178 3247 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Dgcr8-201ENSMUST00000009321 4320 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Acin1-208ENSMUST00000126166 2369 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Trip13-201ENSMUST00000022053 3399 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Zfp362-202ENSMUST00000106072 2812 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Ighv10-3-201ENSMUST00000103495 377 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Gm9089-201ENSMUST00000122027 526 ntBASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Treml4-202ENSMUST00000125426 992 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Cdpf1-205ENSMUST00000150995 566 ntAPPRIS P1 TSL 3 BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Spata3-210ENSMUST00000153247 884 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Elof1-202ENSMUST00000166335 1053 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Fam166b-206ENSMUST00000171134 1198 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Ly6c1-202ENSMUST00000179762 838 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Nop10-201ENSMUST00000028553 1109 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Sst-201ENSMUST00000004480 599 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Sun2-201ENSMUST00000046259 3804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Tbca-201ENSMUST00000046644 559 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Krtap4-2-201ENSMUST00000058987 974 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Gm4950-201ENSMUST00000091905 618 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Cep41-203ENSMUST00000115131 2256 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Zyg11a-201ENSMUST00000043793 2289 ntAPPRIS P2 TSL 5 BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Car10-201ENSMUST00000042943 3293 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Hspa4l-201ENSMUST00000108086 2744 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Oit3-201ENSMUST00000009798 2717 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Chrdl1-204ENSMUST00000166406 2605 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Frmd8-201ENSMUST00000025728 4504 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Dcaf11-202ENSMUST00000117236 2538 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Nars2-201ENSMUST00000044466 3778 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Ocln-203ENSMUST00000159459 1950 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 CT009757.3-201ENSMUST00000223367 2320 ntBASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Prx-204ENSMUST00000125990 4298 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Gm1840-201ENSMUST00000051687 1432 ntBASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Serpina1b-203ENSMUST00000186166 1762 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Setd1a-201ENSMUST00000047075 6487 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Ank2-203ENSMUST00000182008 2474 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Camsap3-205ENSMUST00000207432 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim54Q9ERP3 Gja8-201ENSMUST00000062944 6940 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Oxsm-202ENSMUST00000112624 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 4931415C17Rik-202ENSMUST00000131064 2255 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Cdc7-203ENSMUST00000117196 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Col18a1-203ENSMUST00000105409 4791 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Cers6-201ENSMUST00000028426 7038 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Egr1-202ENSMUST00000165033 3036 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Slc10a3-204ENSMUST00000114147 1708 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Nek1-208ENSMUST00000211256 4810 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Rgs6-211ENSMUST00000191107 1621 ntTSL 5 BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Abcb9-201ENSMUST00000031354 3661 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Krtap4-6-201ENSMUST00000100476 918 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Gm23272-201ENSMUST00000104053 129 ntBASIC12.6□□□□□ -0.39
Trim54Q9ERP3 A230006K03Rik-201ENSMUST00000107533 977 ntTSL 5 BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Serf2-202ENSMUST00000110615 876 ntTSL 2 BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Myl2-203ENSMUST00000111751 889 ntAPPRIS P1 TSL 3 BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Mia-202ENSMUST00000121848 572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 1110028F11Rik-201ENSMUST00000137077 837 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Gzmc-201ENSMUST00000015585 894 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Gm26047-201ENSMUST00000157308 113 ntBASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Gm24398-201ENSMUST00000157870 109 ntBASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Gm8531-201ENSMUST00000188319 893 ntBASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Gm37406-201ENSMUST00000192478 500 ntTSL 3 BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Gm26047-202ENSMUST00000198840 115 ntBASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Gm44158-201ENSMUST00000203881 505 ntBASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Gm3793-201ENSMUST00000204973 672 ntBASIC12.6□□□□□ -0.39
Trim54Q9ERP3 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Cplx3-203ENSMUST00000217015 540 ntTSL 2 BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 CT025553.1-201ENSMUST00000226292 299 ntBASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Krtap6-2-201ENSMUST00000082065 786 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Gm26783-201ENSMUST00000181197 2377 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Gabre-201ENSMUST00000064780 4306 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Ptprt-203ENSMUST00000109443 12112 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Arfgap1-202ENSMUST00000108859 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Phykpl-206ENSMUST00000167797 3116 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Atl3-202ENSMUST00000170373 6474 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Oprm1-205ENSMUST00000078634 1695 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Dpysl5-201ENSMUST00000088081 5022 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Fen1-203ENSMUST00000142241 2152 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Fndc8-201ENSMUST00000018988 2166 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Egfem1-202ENSMUST00000119598 2687 ntAPPRIS P4 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Gm42890-202ENSMUST00000167642 2566 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Ly6e-210ENSMUST00000188866 2068 ntAPPRIS P1 TSL 3 BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Trpv4-201ENSMUST00000071968 3228 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Slc6a4-201ENSMUST00000021195 2725 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC12.6□□□□□ -0.39
Trim54Q9ERP3 Trappc5-202ENSMUST00000207787 4411 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
Trim54Q9ERP3 Kif1a-201ENSMUST00000086819 5097 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Trim54Q9ERP3 Eif4g1-217ENSMUST00000143939 5114 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 58 ms