Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Znrf3-203ENSMUST00000172492 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3bQ3ULL6 Themis3-201ENSMUST00000024914 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3bQ3ULL6 Slx4ip-201ENSMUST00000028737 2556 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3bQ3ULL6 Fbxo25-204ENSMUST00000209913 2035 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3bQ3ULL6 Coro6-202ENSMUST00000052515 1476 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3bQ3ULL6 Gm15541-201ENSMUST00000147449 2713 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3bQ3ULL6 Gm13990-201ENSMUST00000151391 2701 ntTSL 5 BASIC12.45□□□□□ -0.42
Upf3bQ3ULL6 Slc52a2-201ENSMUST00000023220 2700 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3bQ3ULL6 4933438K21Rik-201ENSMUST00000175787 1693 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3bQ3ULL6 Gm10851-201ENSMUST00000192087 1685 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3bQ3ULL6 Stk32b-201ENSMUST00000094836 3458 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3bQ3ULL6 Spata7-203ENSMUST00000101146 1913 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3bQ3ULL6 Rgr-203ENSMUST00000225070 4704 ntBASIC12.45□□□□□ -0.42
Upf3bQ3ULL6 Sptbn2-201ENSMUST00000008991 8251 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Alg12-204ENSMUST00000162183 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Tapbpl-201ENSMUST00000043422 2352 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Lingo4-201ENSMUST00000050975 3645 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Dpep2-206ENSMUST00000227363 1844 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Parp9-203ENSMUST00000114878 3548 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Vmn1r45-206ENSMUST00000227977 3297 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Rbm8a2-201ENSMUST00000104983 1338 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Gm37014-201ENSMUST00000194723 2253 ntBASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Ldhd-201ENSMUST00000070004 2273 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Brwd1-204ENSMUST00000113829 9843 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Pbrm1-207ENSMUST00000112095 7907 ntTSL 5 BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Slc1a2-203ENSMUST00000111212 1957 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Gm45897-201ENSMUST00000212679 1998 ntTSL 5 BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Mir680-2-201ENSMUST00000102163 110 ntBASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Gm23251-201ENSMUST00000103773 110 ntBASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Gm6506-201ENSMUST00000119775 1136 ntBASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 C230038L03Rik-202ENSMUST00000136294 1197 ntTSL 2 BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 4930562C15Rik-202ENSMUST00000171105 1299 ntTSL 2 BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Cplx3-203ENSMUST00000217015 540 ntTSL 2 BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 AC155637.1-201ENSMUST00000218560 636 ntBASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 CT009713.8-202ENSMUST00000224732 385 ntBASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Gm1821-202ENSMUST00000227415 750 ntBASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Nudt7-201ENSMUST00000066514 935 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 BC048507-201ENSMUST00000078471 600 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Tnni3-201ENSMUST00000098859 912 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Cul5-201ENSMUST00000034529 3585 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Spock3-203ENSMUST00000118003 2860 ntAPPRIS P3 TSL 5 BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Apon-202ENSMUST00000218722 1747 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Olfr279-203ENSMUST00000216822 5605 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 D030045P18Rik-204ENSMUST00000215085 2186 ntTSL 5 BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Drd3-201ENSMUST00000023390 1455 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Becn1-205ENSMUST00000130916 4365 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Serpine1-201ENSMUST00000041388 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Vezf1-201ENSMUST00000018521 4583 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Tmem41b-202ENSMUST00000118429 2774 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Madd-211ENSMUST00000111373 5641 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Ntng2-202ENSMUST00000071201 1881 ntTSL 5 BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Susd5-201ENSMUST00000135338 4083 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Spata48-201ENSMUST00000020410 1430 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Tjp3-205ENSMUST00000219479 2901 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 AI314180-202ENSMUST00000102889 7045 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Gdpd2-201ENSMUST00000019503 2495 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Ffar1-201ENSMUST00000052700 4175 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Gnb1l-204ENSMUST00000115601 3507 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Gm34785-201ENSMUST00000222571 4582 ntTSL 5 BASIC12.44□□□□□ -0.42
Upf3bQ3ULL6 Mki67-201ENSMUST00000033310 10061 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
Upf3bQ3ULL6 Mfap3l-203ENSMUST00000161421 4142 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3bQ3ULL6 Fxyd5-212ENSMUST00000162733 2998 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3bQ3ULL6 Tcn2-203ENSMUST00000109989 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3bQ3ULL6 Gnas-209ENSMUST00000109088 3519 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3bQ3ULL6 Gnas-201ENSMUST00000080493 3519 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3bQ3ULL6 Galnt10-201ENSMUST00000066987 4715 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3bQ3ULL6 Rps6kl1-202ENSMUST00000221972 2881 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3bQ3ULL6 Nelfcd-201ENSMUST00000016397 2280 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3bQ3ULL6 Rbm47-209ENSMUST00000201544 5211 ntAPPRIS P3 TSL 5 BASIC12.43□□□□□ -0.42
Upf3bQ3ULL6 AC167022.1-201ENSMUST00000218647 1458 ntBASIC12.43□□□□□ -0.42
Upf3bQ3ULL6 Nsd3-206ENSMUST00000142395 10105 ntAPPRIS P2 TSL 5 BASIC12.43□□□□□ -0.42
Upf3bQ3ULL6 Trav13-1-201ENSMUST00000103651 331 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Upf3bQ3ULL6 Gm12579-201ENSMUST00000118040 783 ntBASIC12.43□□□□□ -0.42
Upf3bQ3ULL6 Slpi-202ENSMUST00000165980 488 ntAPPRIS ALT2 TSL 3 BASIC12.43□□□□□ -0.42
Upf3bQ3ULL6 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3bQ3ULL6 Mir7070-201ENSMUST00000183657 86 ntBASIC12.43□□□□□ -0.42
Upf3bQ3ULL6 Gm28982-201ENSMUST00000186895 512 ntTSL 3 BASIC12.43□□□□□ -0.42
Upf3bQ3ULL6 Olfr1380-201ENSMUST00000204300 938 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Upf3bQ3ULL6 Gm45909-201ENSMUST00000212413 1031 ntBASIC12.43□□□□□ -0.42
Upf3bQ3ULL6 1500015O10Rik-201ENSMUST00000027217 902 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3bQ3ULL6 Gm9785-201ENSMUST00000062642 1006 ntBASIC12.43□□□□□ -0.42
Upf3bQ3ULL6 Vdr-201ENSMUST00000023119 4370 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3bQ3ULL6 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC12.43□□□□□ -0.42
Upf3bQ3ULL6 Gm14685-202ENSMUST00000179117 2773 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3bQ3ULL6 Clec16a-201ENSMUST00000038145 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3bQ3ULL6 Zfp108-202ENSMUST00000205982 2577 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3bQ3ULL6 Gpld1-201ENSMUST00000021773 5224 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
Upf3bQ3ULL6 Wdcp-202ENSMUST00000085793 1992 ntAPPRIS ALT2 TSL 2 BASIC12.43□□□□□ -0.42
Upf3bQ3ULL6 Myo7a-213ENSMUST00000205746 6689 ntTSL 5 BASIC12.43□□□□□ -0.42
Upf3bQ3ULL6 Ddx11-205ENSMUST00000224497 4141 ntAPPRIS ALT2 BASIC12.43□□□□□ -0.42
Upf3bQ3ULL6 Pnma5-202ENSMUST00000114540 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Gm45011-201ENSMUST00000207620 2297 ntBASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Ebf2-202ENSMUST00000176029 2784 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Arvcf-202ENSMUST00000115610 3829 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 8430408G22Rik-202ENSMUST00000178241 1317 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Lclat1-201ENSMUST00000067545 4467 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Gm20658-201ENSMUST00000175871 1489 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Cacng5-201ENSMUST00000039071 3705 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Gimap5-201ENSMUST00000055558 1953 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 53.5 ms