Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Gm16938-201ENSMUST00000180517 464 ntTSL 5 BASIC12.24□□□□□ -0.45
Upf3aQ3ULJ3 Clec7a-202ENSMUST00000184581 707 ntAPPRIS P2 TSL 3 BASIC12.24□□□□□ -0.45
Upf3aQ3ULJ3 Gm43463-201ENSMUST00000195967 1803 ntBASIC12.24□□□□□ -0.45
Upf3aQ3ULJ3 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC12.24□□□□□ -0.45
Upf3aQ3ULJ3 AC168279.1-201ENSMUST00000214611 382 ntBASIC12.24□□□□□ -0.45
Upf3aQ3ULJ3 Stt3a-209ENSMUST00000217599 285 ntTSL 5 BASIC12.24□□□□□ -0.45
Upf3aQ3ULJ3 Ikzf4-203ENSMUST00000221150 2213 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3aQ3ULJ3 AC153152.3-201ENSMUST00000222188 1135 ntBASIC12.24□□□□□ -0.45
Upf3aQ3ULJ3 Tepsin-201ENSMUST00000026442 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3aQ3ULJ3 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3aQ3ULJ3 Zfp810-201ENSMUST00000086278 3238 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3aQ3ULJ3 Gm10750-201ENSMUST00000099266 1506 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Upf3aQ3ULJ3 Pik3cd-206ENSMUST00000122059 4832 ntAPPRIS ALT1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3aQ3ULJ3 Igfn1-203ENSMUST00000166193 8989 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3aQ3ULJ3 Jade2-203ENSMUST00000109091 6099 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3aQ3ULJ3 Ablim1-210ENSMUST00000111550 2731 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Upf3aQ3ULJ3 Immt-203ENSMUST00000114151 2518 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3aQ3ULJ3 Myzap-201ENSMUST00000093823 2283 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Mgll-201ENSMUST00000089449 3867 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Herc3-201ENSMUST00000031823 3596 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Bckdk-202ENSMUST00000124533 1792 ntTSL 3 BASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Btnl7-ps-201ENSMUST00000023469 1763 ntBASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Gabarapl2-201ENSMUST00000034428 1677 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Clrn1-203ENSMUST00000072551 1662 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Ctps2-206ENSMUST00000112303 3289 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Gm37600-201ENSMUST00000193764 3292 ntBASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Fam214b-205ENSMUST00000107959 3060 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 E330023G01Rik-201ENSMUST00000186387 1483 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Ptpru-201ENSMUST00000030741 4416 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Zfp362-202ENSMUST00000106072 2812 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Bdnf-205ENSMUST00000111045 3973 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Cfap161-201ENSMUST00000011298 1335 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Ighv10-1-201ENSMUST00000103492 359 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Gm12791-201ENSMUST00000120788 655 ntBASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Gm14266-202ENSMUST00000146542 1067 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Gm12406-201ENSMUST00000155382 697 ntTSL 3 BASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Gm24248-201ENSMUST00000157321 322 ntBASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Gm8723-201ENSMUST00000166076 820 ntBASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Gm8701-201ENSMUST00000169259 874 ntBASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 1110059E24Rik-205ENSMUST00000178523 629 ntTSL 3 BASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 A930005H10Rik-204ENSMUST00000185681 625 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 A930005H10Rik-206ENSMUST00000188260 739 ntTSL 2 BASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Gm28760-202ENSMUST00000190376 481 ntTSL 5 BASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Gm37638-201ENSMUST00000194337 1123 ntBASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Gm38314-201ENSMUST00000195709 625 ntBASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Fam212a-201ENSMUST00000048568 1025 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Krtap4-13-201ENSMUST00000050106 815 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Prpf19-203ENSMUST00000179297 6035 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Bicra-201ENSMUST00000094821 5360 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Ly6e-210ENSMUST00000188866 2068 ntAPPRIS P1 TSL 3 BASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Kif1a-210ENSMUST00000190723 6141 ntTSL 5 BASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Zeb2-212ENSMUST00000176438 9124 ntAPPRIS P2 TSL 5 BASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Slc1a2-203ENSMUST00000111212 1957 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Gm18263-201ENSMUST00000220846 1928 ntBASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Dpyd-201ENSMUST00000039177 4492 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Akr1d1-201ENSMUST00000040987 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 Mylk-201ENSMUST00000023538 7824 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3aQ3ULJ3 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC12.22□□□□□ -0.45
Upf3aQ3ULJ3 Slc25a25-201ENSMUST00000028160 3294 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Upf3aQ3ULJ3 Apc2-201ENSMUST00000020349 9074 ntAPPRIS P2 TSL 5 BASIC12.22□□□□□ -0.45
Upf3aQ3ULJ3 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Upf3aQ3ULJ3 Gm7224-201ENSMUST00000121359 2066 ntBASIC12.22□□□□□ -0.45
Upf3aQ3ULJ3 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Upf3aQ3ULJ3 Capzb-201ENSMUST00000030518 1390 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Upf3aQ3ULJ3 5033428I22Rik-201ENSMUST00000181638 2040 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Upf3aQ3ULJ3 Gm9415-201ENSMUST00000200462 1321 ntBASIC12.22□□□□□ -0.45
Upf3aQ3ULJ3 Gm25053-201ENSMUST00000103982 133 ntBASIC12.22□□□□□ -0.45
Upf3aQ3ULJ3 Gm25922-201ENSMUST00000104281 130 ntBASIC12.22□□□□□ -0.45
Upf3aQ3ULJ3 Xlr4c-204ENSMUST00000114531 1104 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
Upf3aQ3ULJ3 Cetn2-203ENSMUST00000114551 1286 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Upf3aQ3ULJ3 Clps-202ENSMUST00000114785 369 ntTSL 2 BASIC12.22□□□□□ -0.45
Upf3aQ3ULJ3 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Upf3aQ3ULJ3 Utp23-202ENSMUST00000136129 779 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Upf3aQ3ULJ3 Ndufc2-202ENSMUST00000149122 470 ntTSL 2 BASIC12.22□□□□□ -0.45
Upf3aQ3ULJ3 Gm22379-201ENSMUST00000157480 131 ntBASIC12.22□□□□□ -0.45
Upf3aQ3ULJ3 Gm24679-201ENSMUST00000158762 111 ntBASIC12.22□□□□□ -0.45
Upf3aQ3ULJ3 Gm17116-201ENSMUST00000169175 1013 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Upf3aQ3ULJ3 Gm17597-201ENSMUST00000181220 1115 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Upf3aQ3ULJ3 Iqcf3-202ENSMUST00000186668 633 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Upf3aQ3ULJ3 1700088E04Rik-210ENSMUST00000190509 871 ntTSL 5 BASIC12.22□□□□□ -0.45
Upf3aQ3ULJ3 Gm19587-201ENSMUST00000191395 545 ntBASIC12.22□□□□□ -0.45
Upf3aQ3ULJ3 Gm25053-202ENSMUST00000199731 132 ntBASIC12.22□□□□□ -0.45
Upf3aQ3ULJ3 Gm18463-201ENSMUST00000207258 474 ntBASIC12.22□□□□□ -0.45
Upf3aQ3ULJ3 Gm18460-201ENSMUST00000208088 464 ntBASIC12.22□□□□□ -0.45
Upf3aQ3ULJ3 Gm18065-201ENSMUST00000221395 526 ntBASIC12.22□□□□□ -0.45
Upf3aQ3ULJ3 AC154572.1-201ENSMUST00000226098 1204 ntBASIC12.22□□□□□ -0.45
Upf3aQ3ULJ3 Gm4604-201ENSMUST00000025040 390 ntBASIC12.22□□□□□ -0.45
Upf3aQ3ULJ3 Uqcc1-201ENSMUST00000006036 808 ntTSL 5 BASIC12.22□□□□□ -0.45
Upf3aQ3ULJ3 Rps10-ps1-201ENSMUST00000074353 495 ntBASIC12.22□□□□□ -0.45
Upf3aQ3ULJ3 Tmem220-202ENSMUST00000079077 1147 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Upf3aQ3ULJ3 Gm8325-201ENSMUST00000099086 453 ntBASIC12.22□□□□□ -0.45
Upf3aQ3ULJ3 Spag6-201ENSMUST00000095132 2458 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Upf3aQ3ULJ3 Lrrc3-201ENSMUST00000057608 4296 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Upf3aQ3ULJ3 Ifi47-202ENSMUST00000109202 1773 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
Upf3aQ3ULJ3 Map3k4-201ENSMUST00000089058 5305 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 38 ms