Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Gm13019-201ENSMUST00000120000 276 ntBASIC12.88□□□□□ -0.35
Col6a1Q04857 Gm11502-201ENSMUST00000120917 1211 ntBASIC12.88□□□□□ -0.35
Col6a1Q04857 Gm7150-201ENSMUST00000122032 981 ntBASIC12.88□□□□□ -0.35
Col6a1Q04857 Gm15569-201ENSMUST00000133675 594 ntTSL 3 BASIC12.88□□□□□ -0.35
Col6a1Q04857 AC034099.1-202ENSMUST00000133843 833 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Col6a1Q04857 2700099C18Rik-202ENSMUST00000182402 1275 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a1Q04857 Gm9136-201ENSMUST00000193368 454 ntBASIC12.88□□□□□ -0.35
Col6a1Q04857 Gm38117-201ENSMUST00000194653 939 ntBASIC12.88□□□□□ -0.35
Col6a1Q04857 AC154826.1-201ENSMUST00000217369 498 ntTSL 5 BASIC12.88□□□□□ -0.35
Col6a1Q04857 Chmp3-202ENSMUST00000065364 998 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a1Q04857 A530032D15Rik-201ENSMUST00000160792 1492 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a1Q04857 Oc90-202ENSMUST00000079776 1670 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a1Q04857 Cdip1-203ENSMUST00000118703 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a1Q04857 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a1Q04857 Cmtm6-201ENSMUST00000035007 3383 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a1Q04857 Bicra-201ENSMUST00000094821 5360 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Col6a1Q04857 Brdt-201ENSMUST00000031215 4745 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a1Q04857 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a1Q04857 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Col6a1Q04857 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a1Q04857 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a1Q04857 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a1Q04857 Gm6655-201ENSMUST00000201932 1309 ntBASIC12.88□□□□□ -0.35
Col6a1Q04857 Gm45576-201ENSMUST00000210981 1322 ntTSL 5 BASIC12.88□□□□□ -0.35
Col6a1Q04857 Myh6-205ENSMUST00000226297 6008 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Col6a1Q04857 Unc13a-201ENSMUST00000030170 10255 ntAPPRIS P2 TSL 5 BASIC12.87□□□□□ -0.35
Col6a1Q04857 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a1Q04857 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a1Q04857 Phyhd1-212ENSMUST00000154647 1678 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a1Q04857 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a1Q04857 Gm15622-201ENSMUST00000143025 1464 ntTSL 5 BASIC12.87□□□□□ -0.35
Col6a1Q04857 Dab2ip-209ENSMUST00000135741 4128 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a1Q04857 Wasf2-202ENSMUST00000105912 2236 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a1Q04857 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a1Q04857 1700125H20Rik-202ENSMUST00000100681 687 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a1Q04857 Olfr1258-202ENSMUST00000111516 936 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Col6a1Q04857 Rpl19-ps1-201ENSMUST00000121059 591 ntBASIC12.87□□□□□ -0.35
Col6a1Q04857 Gm13166-201ENSMUST00000123828 940 ntTSL 5 BASIC12.87□□□□□ -0.35
Col6a1Q04857 Gm13236-201ENSMUST00000153010 940 ntTSL 5 BASIC12.87□□□□□ -0.35
Col6a1Q04857 Gm17214-201ENSMUST00000164501 541 ntBASIC12.87□□□□□ -0.35
Col6a1Q04857 Ighv1-76-201ENSMUST00000169155 294 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Col6a1Q04857 Ighv1-62-1-202ENSMUST00000171270 90 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Col6a1Q04857 Gm13278-201ENSMUST00000177771 549 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Col6a1Q04857 Gm13275-201ENSMUST00000178347 549 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Col6a1Q04857 Gm13277-201ENSMUST00000178480 549 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Col6a1Q04857 Gm13279-201ENSMUST00000178602 549 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Col6a1Q04857 Gm21844-201ENSMUST00000178699 663 ntTSL 3 BASIC12.87□□□□□ -0.35
Col6a1Q04857 Gm13289-201ENSMUST00000179158 549 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Col6a1Q04857 Gm13276-201ENSMUST00000179372 549 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Col6a1Q04857 Gm13287-201ENSMUST00000179490 549 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Col6a1Q04857 Gm37981-201ENSMUST00000194280 535 ntBASIC12.87□□□□□ -0.35
Col6a1Q04857 Gm44315-201ENSMUST00000203041 219 ntBASIC12.87□□□□□ -0.35
Col6a1Q04857 Gm6108-201ENSMUST00000208365 367 ntBASIC12.87□□□□□ -0.35
Col6a1Q04857 Isoc2b-205ENSMUST00000208816 820 ntAPPRIS P1 TSL 3 BASIC12.87□□□□□ -0.35
Col6a1Q04857 Gm3433-201ENSMUST00000210149 1058 ntBASIC12.87□□□□□ -0.35
Col6a1Q04857 9430078K24Rik-203ENSMUST00000220293 638 ntTSL 3 BASIC12.87□□□□□ -0.35
Col6a1Q04857 Gm40879-201ENSMUST00000220759 612 ntBASIC12.87□□□□□ -0.35
Col6a1Q04857 Gm13271-201ENSMUST00000094992 549 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Col6a1Q04857 Rbm12b2-201ENSMUST00000063839 3327 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a1Q04857 Caln1-201ENSMUST00000086029 1801 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a1Q04857 Lysmd1-201ENSMUST00000066386 2394 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a1Q04857 Lzts3-201ENSMUST00000045761 4201 ntAPPRIS P3 TSL 5 BASIC12.87□□□□□ -0.35
Col6a1Q04857 Tmem237-205ENSMUST00000186794 1533 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a1Q04857 Tspan2-201ENSMUST00000029451 4484 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a1Q04857 Zfp593-201ENSMUST00000030644 1994 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a1Q04857 Strip2-205ENSMUST00000151738 5281 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a1Q04857 Prr36-201ENSMUST00000168386 4616 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
Col6a1Q04857 Cnot7-211ENSMUST00000149992 2982 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a1Q04857 AU022754-201ENSMUST00000180441 2976 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a1Q04857 Gng5-202ENSMUST00000118280 2419 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a1Q04857 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a1Q04857 Rabgef1-203ENSMUST00000119797 2690 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col6a1Q04857 AC122018.1-201ENSMUST00000217769 1686 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Col6a1Q04857 Ercc2-202ENSMUST00000108460 3485 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Col6a1Q04857 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col6a1Q04857 Esco2-201ENSMUST00000022613 2913 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col6a1Q04857 Entpd5-203ENSMUST00000110272 4972 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col6a1Q04857 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Col6a1Q04857 Cyp2j13-203ENSMUST00000107078 1493 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Col6a1Q04857 Lbr-201ENSMUST00000005003 3510 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col6a1Q04857 Wdr89-201ENSMUST00000062370 2979 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col6a1Q04857 Pex3-207ENSMUST00000170376 1381 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Col6a1Q04857 Slc20a1-202ENSMUST00000110315 3219 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col6a1Q04857 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col6a1Q04857 Herc4-208ENSMUST00000219577 3914 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col6a1Q04857 E2f8-202ENSMUST00000119223 3499 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col6a1Q04857 Pttg1-203ENSMUST00000101340 700 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
Col6a1Q04857 Polr2i-203ENSMUST00000108193 488 ntTSL 3 BASIC12.86□□□□□ -0.35
Col6a1Q04857 Ice2-202ENSMUST00000117246 1201 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Col6a1Q04857 Gm13351-201ENSMUST00000118087 414 ntBASIC12.86□□□□□ -0.35
Col6a1Q04857 Pttg1-205ENSMUST00000118368 696 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
Col6a1Q04857 Gm6630-201ENSMUST00000119199 454 ntBASIC12.86□□□□□ -0.35
Col6a1Q04857 Gm12036-201ENSMUST00000120008 530 ntBASIC12.86□□□□□ -0.35
Col6a1Q04857 Spaca9-202ENSMUST00000124840 699 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col6a1Q04857 Gm13008-201ENSMUST00000142289 507 ntTSL 5 BASIC12.86□□□□□ -0.35
Col6a1Q04857 2810403D21Rik-208ENSMUST00000153212 1005 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Col6a1Q04857 Cnfn-202ENSMUST00000167591 698 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col6a1Q04857 Gm9507-202ENSMUST00000180157 654 ntBASIC12.86□□□□□ -0.35
Col6a1Q04857 Gm26759-201ENSMUST00000181773 1251 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Col6a1Q04857 Gm5340-201ENSMUST00000203733 880 ntBASIC12.86□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 62.5 ms