Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Cdc40Q9DC48 Gm19459-201ENSMUST00000176240 835 ntBASIC10.85□□□□□ -0.67
Cdc40Q9DC48 Gm28778-201ENSMUST00000190734 785 ntAPPRIS P1 TSL 3 BASIC10.85□□□□□ -0.67
Cdc40Q9DC48 Gm18893-201ENSMUST00000198416 943 ntBASIC10.85□□□□□ -0.67
Cdc40Q9DC48 Gm43050-202ENSMUST00000201152 651 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Cdc40Q9DC48 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cdc40Q9DC48 Gm8956-201ENSMUST00000203939 825 ntBASIC10.85□□□□□ -0.67
Cdc40Q9DC48 C530044C16Rik-202ENSMUST00000205217 1239 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Cdc40Q9DC48 Ccl1-201ENSMUST00000021043 611 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Cdc40Q9DC48 Mt3-202ENSMUST00000211915 440 ntTSL 3 BASIC10.85□□□□□ -0.67
Cdc40Q9DC48 AC141438.2-201ENSMUST00000215068 271 ntBASIC10.85□□□□□ -0.67
Cdc40Q9DC48 AC135114.1-201ENSMUST00000228682 270 ntBASIC10.85□□□□□ -0.67
Cdc40Q9DC48 Pf4-201ENSMUST00000031320 588 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cdc40Q9DC48 Cryab-201ENSMUST00000034562 946 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cdc40Q9DC48 Cthrc1-201ENSMUST00000067072 1166 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cdc40Q9DC48 Rpl17-201ENSMUST00000079716 775 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cdc40Q9DC48 Ufc1-201ENSMUST00000080001 1007 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cdc40Q9DC48 4833422C13Rik-202ENSMUST00000160385 2828 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Cdc40Q9DC48 Fam234b-202ENSMUST00000111916 2927 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Cdc40Q9DC48 Lsp1-211ENSMUST00000149521 1910 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Cdc40Q9DC48 Smarca2-209ENSMUST00000176030 5862 ntAPPRIS ALT2 TSL 5 BASIC10.85□□□□□ -0.67
Cdc40Q9DC48 Zfp853-203ENSMUST00000212715 3133 ntAPPRIS ALT2 TSL 5 BASIC10.85□□□□□ -0.67
Cdc40Q9DC48 5033428I22Rik-201ENSMUST00000181638 2040 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Cdc40Q9DC48 Spert-204ENSMUST00000169658 1474 ntAPPRIS ALT2 TSL 3 BASIC10.85□□□□□ -0.67
Cdc40Q9DC48 Zfp536-202ENSMUST00000175941 4423 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cdc40Q9DC48 Ciita-201ENSMUST00000023147 5254 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cdc40Q9DC48 Fam84a-201ENSMUST00000020926 4164 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cdc40Q9DC48 Maged2-202ENSMUST00000112697 1851 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cdc40Q9DC48 AC129931.1-201ENSMUST00000228865 1861 ntBASIC10.85□□□□□ -0.67
Cdc40Q9DC48 AC160410.1-201ENSMUST00000219298 1972 ntBASIC10.85□□□□□ -0.67
Cdc40Q9DC48 Fcrl1-201ENSMUST00000072480 1980 ntAPPRIS P3 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cdc40Q9DC48 Klhl14-202ENSMUST00000122333 4423 ntAPPRIS P1 TSL 5 BASIC10.85□□□□□ -0.67
Cdc40Q9DC48 Rad23a-201ENSMUST00000003911 2074 ntAPPRIS P3 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cdc40Q9DC48 Ccdc170-201ENSMUST00000019901 2151 ntAPPRIS P2 TSL 5 BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Mei1-201ENSMUST00000089178 3974 ntAPPRIS ALT2 TSL 5 BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Cd79b-201ENSMUST00000044228 1431 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Adarb1-204ENSMUST00000105406 6662 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Cd276-202ENSMUST00000165365 3603 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Lipe-201ENSMUST00000003207 3613 ntAPPRIS P4 TSL 1 (best) BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Fcgbp-203ENSMUST00000138392 7926 ntAPPRIS ALT2 TSL 5 BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Fcgbp-201ENSMUST00000076648 7928 ntAPPRIS P2 TSL 5 BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 AC093022.4-203ENSMUST00000228523 2657 ntBASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Mfsd14b-203ENSMUST00000155487 3832 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Fasn-205ENSMUST00000206589 8333 ntAPPRIS ALT2 TSL 5 BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Trf-203ENSMUST00000112645 2339 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Gm28373-201ENSMUST00000178129 2724 ntTSL 2 BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Ntng1-211ENSMUST00000156177 4652 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Dcaf8-201ENSMUST00000074144 4656 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Mir680-2-201ENSMUST00000102163 110 ntBASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Gm23251-201ENSMUST00000103773 110 ntBASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Gm15131-201ENSMUST00000119124 595 ntBASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Mcfd2-205ENSMUST00000145895 751 ntTSL 2 BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Ccser2-208ENSMUST00000183007 1293 ntTSL 5 BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Gm21976-204ENSMUST00000186911 528 ntTSL 5 BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Gm29539-201ENSMUST00000188031 758 ntTSL 3 BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 4833445I07Rik-202ENSMUST00000194104 579 ntTSL 3 BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Gm42682-201ENSMUST00000198349 1265 ntBASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Gm42817-201ENSMUST00000198962 607 ntTSL 3 BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Gm10109-202ENSMUST00000206890 1211 ntBASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Gm4157-201ENSMUST00000211647 679 ntBASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Gm45770-201ENSMUST00000212105 616 ntBASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Galc-201ENSMUST00000021390 3832 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Timm9-201ENSMUST00000021486 794 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Prss52-201ENSMUST00000022537 1064 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 1700128F08Rik-201ENSMUST00000034483 1110 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Rbp2-201ENSMUST00000035029 672 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Snf8-201ENSMUST00000006217 1004 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Gm10109-201ENSMUST00000072123 1078 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Ifi27-203ENSMUST00000076788 708 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Gm10288-201ENSMUST00000084614 537 ntBASIC10.84□□□□□ -0.67
Cdc40Q9DC48 5330413P13Rik-204ENSMUST00000210606 1464 ntTSL 5 BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Magel2-201ENSMUST00000080403 4631 ntAPPRIS P1 BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Ehbp1-202ENSMUST00000109563 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Gm9129-201ENSMUST00000218173 1689 ntBASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Bpi-202ENSMUST00000109499 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Cpa5-202ENSMUST00000115138 1778 ntTSL 5 BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Qrsl1-201ENSMUST00000020012 1981 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Enah-201ENSMUST00000078719 2889 ntAPPRIS P3 TSL 1 (best) BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Gm26846-201ENSMUST00000181865 4869 ntTSL 5 BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Tox4-201ENSMUST00000022766 5350 ntAPPRIS P1 TSL 5 BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Kbtbd12-202ENSMUST00000120933 4644 ntAPPRIS P1 TSL 5 BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Fam210b-201ENSMUST00000028995 3617 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Atad5-202ENSMUST00000108239 7266 ntAPPRIS ALT2 TSL 5 BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Poll-201ENSMUST00000026239 2324 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Ikzf4-203ENSMUST00000221150 2213 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Ctnnd1-204ENSMUST00000099941 5783 ntTSL 5 BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Spdye4a-201ENSMUST00000085733 1819 ntAPPRIS P2 TSL 1 (best) BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Zc3hc1-203ENSMUST00000115184 1504 ntTSL 5 BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Wdr45-203ENSMUST00000115688 1510 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC10.84□□□□□ -0.67
Cdc40Q9DC48 Lgr5-206ENSMUST00000172806 2652 ntTSL 5 BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Ap1g2-201ENSMUST00000036041 2673 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 5330417C22Rik-202ENSMUST00000106625 5836 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
Retrieved 100 of 76,532 protein–RNA pairs in 41.9 ms