Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 E330021D16Rik-203ENSMUST00000204830 1813 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Lipo2-201ENSMUST00000147153 3562 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 D030068K23Rik-201ENSMUST00000180382 2617 ntTSL 2 BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Kifc5b-201ENSMUST00000078961 2627 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Smc1aQ9CU62 Shtn1-201ENSMUST00000047511 4081 ntAPPRIS P4 TSL 1 (best) BASIC13.08□□□□□ -0.31
Smc1aQ9CU62 Pcdhga4-201ENSMUST00000194418 4727 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Smc1aQ9CU62 Epha6-201ENSMUST00000068860 3930 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Smc1aQ9CU62 Adora1-203ENSMUST00000169927 4581 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.31
Smc1aQ9CU62 Pnpla6-212ENSMUST00000208002 4444 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
Smc1aQ9CU62 Lef1-201ENSMUST00000029611 3482 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.31
Smc1aQ9CU62 Sowahc-201ENSMUST00000182161 4482 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
Smc1aQ9CU62 Gm26599-201ENSMUST00000180590 3189 ntTSL 5 BASIC13.08□□□□□ -0.32
Smc1aQ9CU62 Traf7-202ENSMUST00000088464 2504 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Smc1aQ9CU62 Cd300lf-201ENSMUST00000051264 1864 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Smc1aQ9CU62 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC13.08□□□□□ -0.32
Smc1aQ9CU62 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Smc1aQ9CU62 Pif1-203ENSMUST00000134538 3395 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Smc1aQ9CU62 Hyal1-202ENSMUST00000112387 2706 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Smc1aQ9CU62 Arhgef28-201ENSMUST00000109426 5387 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Smc1aQ9CU62 Car6-201ENSMUST00000030817 1567 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Smc1aQ9CU62 Spns3-202ENSMUST00000092940 2080 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Smc1aQ9CU62 Nono-201ENSMUST00000033673 2562 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Smc1aQ9CU62 Kirrel3-209ENSMUST00000190549 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Smc1aQ9CU62 Gm18626-201ENSMUST00000221512 1409 ntBASIC13.08□□□□□ -0.32
Smc1aQ9CU62 Chl1-204ENSMUST00000203912 4628 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Smc1aQ9CU62 Cdc7-204ENSMUST00000118261 3129 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Smc1aQ9CU62 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC13.08□□□□□ -0.32
Smc1aQ9CU62 Gm15703-201ENSMUST00000120250 880 ntBASIC13.08□□□□□ -0.32
Smc1aQ9CU62 Gm14760-201ENSMUST00000121831 999 ntBASIC13.08□□□□□ -0.32
Smc1aQ9CU62 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC13.08□□□□□ -0.32
Smc1aQ9CU62 Gm42937-201ENSMUST00000197360 752 ntBASIC13.08□□□□□ -0.32
Smc1aQ9CU62 Gm45770-201ENSMUST00000212105 616 ntBASIC13.08□□□□□ -0.32
Smc1aQ9CU62 Olfr1428-203ENSMUST00000214103 2127 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Smc1aQ9CU62 Mthfd1l-202ENSMUST00000117291 3669 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Smc1aQ9CU62 Zfp593-201ENSMUST00000030644 1994 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Smc1aQ9CU62 Cd8b1-201ENSMUST00000065248 1483 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Smc1aQ9CU62 Aicda-201ENSMUST00000043301 2405 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Smc1aQ9CU62 Gm43081-201ENSMUST00000199082 1380 ntBASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Cnpy2-202ENSMUST00000219037 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Gm3716-202ENSMUST00000198582 2879 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Crispld2-201ENSMUST00000034282 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Msh5-201ENSMUST00000007250 2886 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Abhd6-201ENSMUST00000026313 1401 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Tmeff2-201ENSMUST00000081851 3343 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 App-206ENSMUST00000227723 8167 ntAPPRIS ALT2 BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Rgs11-201ENSMUST00000025020 2006 ntAPPRIS P2 TSL 2 BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Gfra1-209ENSMUST00000169850 3224 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Fam166b-203ENSMUST00000107929 865 ntAPPRIS P5 TSL 5 BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Rpl36-ps10-201ENSMUST00000117431 216 ntBASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Gm6039-201ENSMUST00000121667 1250 ntBASIC13.07□□□□□ -0.32
Smc1aQ9CU62 1700003G13Rik-202ENSMUST00000131342 705 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Lypd1-203ENSMUST00000159529 989 ntTSL 2 BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Arid3b-204ENSMUST00000164010 1259 ntTSL 5 BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Gm38139-201ENSMUST00000195806 704 ntTSL 2 BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Rbakdn-201ENSMUST00000198334 520 ntTSL 2 BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Gm9555-201ENSMUST00000200908 583 ntBASIC13.07□□□□□ -0.32
Smc1aQ9CU62 4930448A20Rik-201ENSMUST00000205988 1034 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Timm9-201ENSMUST00000021486 794 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Colca2-202ENSMUST00000215038 1269 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 AC159819.2-201ENSMUST00000216151 342 ntBASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Gm9996-201ENSMUST00000070359 913 ntBASIC13.07□□□□□ -0.32
Smc1aQ9CU62 1700001J03Rik-201ENSMUST00000073721 787 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Ufc1-201ENSMUST00000080001 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Sp100-213ENSMUST00000155094 1666 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Btnl1-201ENSMUST00000080254 1861 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Dlec1-206ENSMUST00000140326 5815 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Gm10767-202ENSMUST00000168767 2067 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Vmn1r193-202ENSMUST00000227457 6429 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Coa5-201ENSMUST00000027286 3863 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Ppnr-201ENSMUST00000190974 3525 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Tfr2-201ENSMUST00000031729 2926 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Aoc2-201ENSMUST00000041095 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 AC126262.1-201ENSMUST00000221802 1904 ntBASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Tyk2-203ENSMUST00000214454 4770 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Cbx7-201ENSMUST00000089293 3388 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Rbm47-202ENSMUST00000094757 4643 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Abcc10-202ENSMUST00000095261 5266 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Cic-212ENSMUST00000169266 8221 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Srr-201ENSMUST00000065211 3699 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Gm5580-201ENSMUST00000122096 1362 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Unkl-204ENSMUST00000160896 4787 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Smc1aQ9CU62 Col24a1-201ENSMUST00000029848 7143 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Smc1aQ9CU62 Gm15941-205ENSMUST00000140044 1825 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Smc1aQ9CU62 Caln1-201ENSMUST00000086029 1801 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Smc1aQ9CU62 Abat-201ENSMUST00000065987 4636 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Smc1aQ9CU62 Plin4-202ENSMUST00000190703 5756 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Smc1aQ9CU62 Nop14-201ENSMUST00000041364 2702 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Smc1aQ9CU62 Cd72-204ENSMUST00000107925 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Smc1aQ9CU62 Cib2-201ENSMUST00000041901 1433 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Smc1aQ9CU62 Hhipl2-201ENSMUST00000065900 2525 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 62.6 ms