Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Gm20495-201ENSMUST00000173902 235 ntBASIC12.31□□□□□ -0.44
Clp1Q99LI9 Use1-201ENSMUST00000019169 854 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Clp1Q99LI9 Gm37284-201ENSMUST00000193607 539 ntBASIC12.31□□□□□ -0.44
Clp1Q99LI9 Bcl2l12-205ENSMUST00000207755 605 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
Clp1Q99LI9 AC153962.2-201ENSMUST00000219417 550 ntBASIC12.31□□□□□ -0.44
Clp1Q99LI9 AC114573.1-201ENSMUST00000224120 1210 ntBASIC12.31□□□□□ -0.44
Clp1Q99LI9 Retnla-201ENSMUST00000023329 598 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Clp1Q99LI9 Gm10271-201ENSMUST00000092165 156 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Clp1Q99LI9 Naa10-202ENSMUST00000096316 892 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
Clp1Q99LI9 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Clp1Q99LI9 Armcx3-202ENSMUST00000086880 2024 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
Clp1Q99LI9 Pcdha2-202ENSMUST00000195590 4645 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Clp1Q99LI9 Stau1-204ENSMUST00000109238 2976 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Clp1Q99LI9 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Clp1Q99LI9 Brd3-202ENSMUST00000077737 5272 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Clp1Q99LI9 Pla2g6-206ENSMUST00000173163 3018 ntTSL 5 BASIC12.31□□□□□ -0.44
Clp1Q99LI9 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Clp1Q99LI9 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Clp1Q99LI9 Slitrk5-201ENSMUST00000042767 4831 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
Clp1Q99LI9 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Clp1Q99LI9 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
Clp1Q99LI9 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Clp1Q99LI9 Angpt4-201ENSMUST00000028955 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Clp1Q99LI9 Col15a1-203ENSMUST00000107730 1755 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Unc13a-201ENSMUST00000030170 10255 ntAPPRIS P2 TSL 5 BASIC12.3□□□□□ -0.44
Clp1Q99LI9 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC12.3□□□□□ -0.44
Clp1Q99LI9 Gatb-202ENSMUST00000107672 1820 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Gm14820-201ENSMUST00000126286 1449 ntTSL 3 BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Xpo1-201ENSMUST00000020538 5145 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Gm29724-201ENSMUST00000214688 3062 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Alas2-202ENSMUST00000112715 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Gm28551-201ENSMUST00000144660 3142 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Rnf185-201ENSMUST00000064364 2906 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Cend1-203ENSMUST00000137488 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Clp1Q99LI9 BC027072-201ENSMUST00000057405 5004 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Xkr8-201ENSMUST00000045550 4245 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Gm42748-201ENSMUST00000199354 2341 ntBASIC12.3□□□□□ -0.44
Clp1Q99LI9 Ostm1-202ENSMUST00000105497 770 ntTSL 2 BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Art5-202ENSMUST00000106934 843 ntTSL 5 BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Gm12453-201ENSMUST00000121981 331 ntBASIC12.3□□□□□ -0.44
Clp1Q99LI9 Gm12705-201ENSMUST00000129460 872 ntTSL 2 BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Gm12395-201ENSMUST00000144765 536 ntTSL 5 BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Gm15524-201ENSMUST00000159874 463 ntTSL 3 BASIC12.3□□□□□ -0.44
Clp1Q99LI9 1700021P04Rik-201ENSMUST00000178667 659 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Gm23694-201ENSMUST00000179335 110 ntBASIC12.3□□□□□ -0.44
Clp1Q99LI9 B230110C06Rik-201ENSMUST00000181388 1274 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Olfr1380-201ENSMUST00000204300 938 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Gm6855-201ENSMUST00000206307 790 ntBASIC12.3□□□□□ -0.44
Clp1Q99LI9 Gm45613-201ENSMUST00000210718 443 ntTSL 3 BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Park2-210ENSMUST00000218435 865 ntTSL 5 BASIC12.3□□□□□ -0.44
Clp1Q99LI9 AC123694.1-201ENSMUST00000219525 644 ntTSL 5 BASIC12.3□□□□□ -0.44
Clp1Q99LI9 AC158392.3-201ENSMUST00000224271 1284 ntBASIC12.3□□□□□ -0.44
Clp1Q99LI9 Uqcc1-201ENSMUST00000006036 808 ntTSL 5 BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Gm4409-201ENSMUST00000130734 1919 ntTSL 2 BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Gm11494-201ENSMUST00000142279 1738 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Gm45003-201ENSMUST00000205875 2158 ntBASIC12.3□□□□□ -0.44
Clp1Q99LI9 Myo10-201ENSMUST00000022882 5880 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Asap1-201ENSMUST00000023008 4580 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Phyhipl-201ENSMUST00000046513 2877 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Sidt1-205ENSMUST00000136381 4404 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Rab19-201ENSMUST00000031986 1575 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Gm8146-201ENSMUST00000192106 1847 ntBASIC12.3□□□□□ -0.44
Clp1Q99LI9 Wdfy2-201ENSMUST00000014691 6646 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Setdb2-205ENSMUST00000161459 2995 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Klhl26-205ENSMUST00000210250 2974 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Clp1Q99LI9 AC121805.2-201ENSMUST00000218808 2538 ntBASIC12.3□□□□□ -0.44
Clp1Q99LI9 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Clp1Q99LI9 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Clp1Q99LI9 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Clp1Q99LI9 Tmem92-203ENSMUST00000162809 1437 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Clp1Q99LI9 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Clp1Q99LI9 Mpv17l-204ENSMUST00000141971 2155 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Clp1Q99LI9 Jpt2-201ENSMUST00000024981 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Clp1Q99LI9 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC12.29□□□□□ -0.44
Clp1Q99LI9 Prom2-201ENSMUST00000028855 4796 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Clp1Q99LI9 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Clp1Q99LI9 Ywhab-201ENSMUST00000018470 3013 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Clp1Q99LI9 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Clp1Q99LI9 Dcaf11-202ENSMUST00000117236 2538 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Clp1Q99LI9 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Clp1Q99LI9 Gprasp1-201ENSMUST00000113144 5843 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Clp1Q99LI9 Trmt10b-202ENSMUST00000107800 983 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Clp1Q99LI9 Gm12663-201ENSMUST00000118481 958 ntBASIC12.29□□□□□ -0.44
Clp1Q99LI9 Gm14234-201ENSMUST00000119539 845 ntBASIC12.29□□□□□ -0.44
Clp1Q99LI9 Gm21778-201ENSMUST00000178779 471 ntBASIC12.29□□□□□ -0.44
Clp1Q99LI9 Nmbr-206ENSMUST00000190114 662 ntTSL 3 BASIC12.29□□□□□ -0.44
Clp1Q99LI9 1700017M07Rik-201ENSMUST00000198307 940 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Clp1Q99LI9 Fcer2a-206ENSMUST00000208438 930 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Clp1Q99LI9 Fcer2a-208ENSMUST00000208603 930 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Clp1Q99LI9 Gm18499-201ENSMUST00000220808 1021 ntBASIC12.29□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 51.5 ms