Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Srrt-201ENSMUST00000040873 3024 ntAPPRIS P3 TSL 5 BASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 Grik3-201ENSMUST00000030676 8973 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 Dcaf12l1-202ENSMUST00000115056 3495 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 Zc3hc1-203ENSMUST00000115184 1504 ntTSL 5 BASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 Hyal1-202ENSMUST00000112387 2706 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 Slx4ip-206ENSMUST00000180277 2723 ntAPPRIS P1 TSL 3 BASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 Gpr155-203ENSMUST00000112043 3284 ntAPPRIS P3 TSL 5 BASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 4930519G04Rik-201ENSMUST00000031547 2092 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 Pcdhga4-201ENSMUST00000194418 4727 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 Zfp189-202ENSMUST00000107696 2965 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 Slc2a4-203ENSMUST00000141837 1776 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Exoc3l4-201ENSMUST00000072646 2778 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Dzip1l-202ENSMUST00000112884 3791 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Gm15987-201ENSMUST00000141700 2231 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 AC211878.3-201ENSMUST00000222629 2018 ntBASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Setdb1-202ENSMUST00000107170 4622 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Mapk8ip3-202ENSMUST00000115228 5424 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Tmub2-201ENSMUST00000036376 1939 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Btg2-201ENSMUST00000020692 2743 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Immt-202ENSMUST00000101301 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Gm12766-201ENSMUST00000140298 1823 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Uspl1-201ENSMUST00000050472 3757 ntAPPRIS P4 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Alms1-ps1-201ENSMUST00000159498 2166 ntBASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Trp63-204ENSMUST00000115305 1729 ntAPPRIS ALT1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Ccdc62-201ENSMUST00000094320 3924 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Add2-207ENSMUST00000203724 3143 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Hsd17b10-202ENSMUST00000112617 992 ntTSL 5 BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Pmvk-203ENSMUST00000184515 1156 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Gm34767-201ENSMUST00000191813 1062 ntBASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Gm44136-201ENSMUST00000203819 1106 ntBASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Gm17812-201ENSMUST00000204935 318 ntBASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Gm8959-201ENSMUST00000213150 571 ntBASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Rpl24-201ENSMUST00000023269 677 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Hsd17b10-201ENSMUST00000026289 962 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Ifi27-203ENSMUST00000076788 708 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Olfr541-203ENSMUST00000210357 1642 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Gm38292-201ENSMUST00000192646 3045 ntBASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Pcnt-202ENSMUST00000217838 9341 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Ptpn14-202ENSMUST00000097442 10746 ntAPPRIS P2 TSL 5 BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Tube1-201ENSMUST00000019991 2929 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Srsf6-203ENSMUST00000130411 3527 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Gm11525-201ENSMUST00000134436 2804 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Shoc2-201ENSMUST00000025932 4106 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Galntl6-208ENSMUST00000204128 5680 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Oscar-203ENSMUST00000148012 1796 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Mfsd13b-205ENSMUST00000216241 1761 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Det1-202ENSMUST00000107431 1439 ntTSL 5 BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Gm36940-201ENSMUST00000194281 2036 ntBASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Gm44152-201ENSMUST00000205007 1691 ntBASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Gm43931-201ENSMUST00000204817 2870 ntBASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Gsdma2-201ENSMUST00000017355 1314 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Vipr2-201ENSMUST00000011315 3383 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Chrng-201ENSMUST00000027470 2780 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Dtl-201ENSMUST00000027933 4212 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Neurod6-201ENSMUST00000044767 2150 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Tspyl4-201ENSMUST00000047935 3879 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Gm37131-201ENSMUST00000192502 1561 ntBASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Gm6560-201ENSMUST00000198588 1591 ntBASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Ccndbp1-201ENSMUST00000060455 1569 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sh3rf1Q69ZI1 Itgal-202ENSMUST00000117762 5222 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.51
Sh3rf1Q69ZI1 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.51
Sh3rf1Q69ZI1 Zfp108-202ENSMUST00000205982 2577 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Cxcr5-202ENSMUST00000179828 2824 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Pls3-201ENSMUST00000033547 3242 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Reln-207ENSMUST00000161356 11699 ntAPPRIS P3 TSL 5 BASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 A830018L16Rik-202ENSMUST00000135014 6451 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Gm6157-201ENSMUST00000199935 1897 ntBASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Poc1a-211ENSMUST00000217213 1398 ntTSL 5 BASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Sox8-201ENSMUST00000025003 3000 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Ubxn10-201ENSMUST00000105809 2757 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 9530082P21Rik-203ENSMUST00000181605 3162 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Ncoa6-203ENSMUST00000109670 7101 ntAPPRIS P2 TSL 5 BASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Pmp22-203ENSMUST00000108701 723 ntAPPRIS P1 TSL 3 BASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Gm12395-201ENSMUST00000144765 536 ntTSL 5 BASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Gm13587-201ENSMUST00000152645 366 ntTSL 5 BASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Gm22334-201ENSMUST00000158070 133 ntBASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Gm20426-201ENSMUST00000173657 440 ntBASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Rpl19-201ENSMUST00000017548 751 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Nat8f7-202ENSMUST00000179613 686 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Gm17087-201ENSMUST00000184183 471 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Gm28192-201ENSMUST00000189381 778 ntTSL 5 BASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Gm32999-201ENSMUST00000192693 562 ntBASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 4933401J01Rik-201ENSMUST00000193812 1070 ntBASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Gm7003-201ENSMUST00000195089 312 ntBASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Gm42937-201ENSMUST00000197360 752 ntBASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Gm18730-201ENSMUST00000218038 343 ntBASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Fam25c-201ENSMUST00000052126 408 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Rpl19-202ENSMUST00000092425 737 ntAPPRIS ALT1 TSL 3 BASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Plekhg4-203ENSMUST00000160191 3339 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Ackr3-201ENSMUST00000065587 3065 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Rnf17-201ENSMUST00000095793 5264 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Sp100-213ENSMUST00000155094 1666 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Sh3rf1Q69ZI1 Dpm2-203ENSMUST00000140592 1412 ntTSL 5 BASIC11.83□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 42.2 ms