Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Zmiz2-205ENSMUST00000109787 4116 ntAPPRIS P2 TSL 5 BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Gm37600-201ENSMUST00000193764 3292 ntBASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Cc2d1a-201ENSMUST00000040383 3471 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 D630008O14Rik-201ENSMUST00000144260 1568 ntTSL 2 BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Tspan32-201ENSMUST00000009396 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Sostdc1-201ENSMUST00000041407 1781 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Rab11fip4os1-201ENSMUST00000145652 2187 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Inpp5j-201ENSMUST00000044507 3370 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Syne3-202ENSMUST00000095439 3357 ntAPPRIS P4 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Fut10-202ENSMUST00000110527 2327 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Suclg2-201ENSMUST00000079847 2518 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Corin-207ENSMUST00000177290 2943 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 1700017B05Rik-202ENSMUST00000213199 3722 ntAPPRIS ALT2 TSL 2 BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Rbm47-205ENSMUST00000167950 4895 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Fdxacb1-201ENSMUST00000042391 2658 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Gm9544-201ENSMUST00000223349 2482 ntBASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Il6st-201ENSMUST00000070731 5207 ntAPPRIS P2 TSL 5 BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 0610038B21Rik-201ENSMUST00000181420 1687 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Gm12390-201ENSMUST00000117897 397 ntBASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Gm11960-201ENSMUST00000122068 925 ntBASIC10.9□□□□□ -0.66
Trim40Q3UWA4 H2afb1-201ENSMUST00000122446 348 ntAPPRIS P1 BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Pcp2-206ENSMUST00000144977 534 ntAPPRIS ALT2 TSL 3 BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 4932443L11Rik-201ENSMUST00000148353 414 ntTSL 5 BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Gm17180-201ENSMUST00000172211 435 ntTSL 3 BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Gm3890-201ENSMUST00000182416 207 ntBASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Myo15b-201ENSMUST00000040703 2825 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Ddo-202ENSMUST00000213442 2408 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Mx2-201ENSMUST00000024112 2417 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Calm1-201ENSMUST00000001204 3987 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Slc7a3-201ENSMUST00000073927 2232 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Psd4-201ENSMUST00000056641 4748 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Sh2d2a-202ENSMUST00000107581 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Ttll5-202ENSMUST00000040273 4147 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Zbtb45-205ENSMUST00000210282 3908 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 1810014B01Rik-202ENSMUST00000218095 1622 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Cyp2d26-201ENSMUST00000006094 1645 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Csnk1a1-204ENSMUST00000165123 4083 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Fndc8-201ENSMUST00000018988 2166 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 D130019J16Rik-201ENSMUST00000193261 2158 ntBASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Gm44369-201ENSMUST00000204543 2175 ntBASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Rbm39-201ENSMUST00000029149 2711 ntAPPRIS ALT1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim40Q3UWA4 Acot9-201ENSMUST00000026324 1752 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Trim40Q3UWA4 Ntrk2-207ENSMUST00000225488 4706 ntAPPRIS P1 BASIC10.9□□□□□ -0.67
Trim40Q3UWA4 Phkg2-201ENSMUST00000033086 1570 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Trim40Q3UWA4 Ak8-201ENSMUST00000074156 1567 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Trim40Q3UWA4 Pde4c-201ENSMUST00000034307 3203 ntTSL 1 (best) BASIC10.9□□□□□ -0.67
Trim40Q3UWA4 Dnmt3a-203ENSMUST00000111186 5424 ntAPPRIS P3 TSL 5 BASIC10.9□□□□□ -0.67
Trim40Q3UWA4 Gm13127-201ENSMUST00000118978 1389 ntBASIC10.9□□□□□ -0.67
Trim40Q3UWA4 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC10.9□□□□□ -0.67
Trim40Q3UWA4 Npy5r-202ENSMUST00000211920 1715 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Ppara-201ENSMUST00000057979 2063 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Olfr177-202ENSMUST00000217377 2401 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Lnx1-202ENSMUST00000087161 2753 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Bcl2l2-203ENSMUST00000133397 3813 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Inpp4a-208ENSMUST00000137266 2934 ntTSL 5 BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Ift88os-201ENSMUST00000149702 2016 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Ccdc129-201ENSMUST00000044729 3431 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 3425401B19Rik-201ENSMUST00000096038 5547 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Cd55-201ENSMUST00000027650 2533 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Cfap74-209ENSMUST00000151083 5487 ntAPPRIS ALT2 TSL 5 BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Ninl-201ENSMUST00000109896 5093 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Slc25a45-206ENSMUST00000155697 1960 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Gm2673-201ENSMUST00000120958 1608 ntBASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Igkv3-12-201ENSMUST00000103396 359 ntAPPRIS P1 BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Gm13449-201ENSMUST00000153559 1231 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 1810008B01Rik-201ENSMUST00000162325 829 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Fam166b-206ENSMUST00000171134 1198 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Gsg1l2-202ENSMUST00000181566 1158 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Scn8a-203ENSMUST00000108908 7030 ntAPPRIS ALT1 TSL 5 BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Grin2b-202ENSMUST00000111905 7484 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Mageb4-201ENSMUST00000096378 2401 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Kif19a-201ENSMUST00000084368 3433 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Gm8131-201ENSMUST00000213783 1570 ntBASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Eps8l1-204ENSMUST00000163893 3868 ntAPPRIS P2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Vezt-202ENSMUST00000118077 2223 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Idi1-201ENSMUST00000169314 3027 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Capza1-201ENSMUST00000094028 3193 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trim40Q3UWA4 Ppat-202ENSMUST00000140076 3981 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 63.7 ms