Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Ccnt1-208ENSMUST00000169707 7397 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Upf3bQ3ULL6 Siglec1-202ENSMUST00000110226 1861 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Upf3bQ3ULL6 Ptprt-203ENSMUST00000109443 12112 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Upf3bQ3ULL6 Ifi47-202ENSMUST00000109202 1773 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
Upf3bQ3ULL6 Srr-201ENSMUST00000065211 3699 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Upf3bQ3ULL6 Lgals3bp-201ENSMUST00000043722 2330 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Upf3bQ3ULL6 Bbs1-201ENSMUST00000053506 5581 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Upf3bQ3ULL6 Fcer2a-201ENSMUST00000005678 2242 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 4932443L11Rik-202ENSMUST00000177130 2827 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 Cog4-201ENSMUST00000034203 2737 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 Tenm3-206ENSMUST00000190840 8663 ntAPPRIS ALT1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 Chmp3-201ENSMUST00000059462 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 Cd8b1-201ENSMUST00000065248 1483 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 Fam114a2-201ENSMUST00000020831 2557 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 Tbrg1-201ENSMUST00000117654 1984 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 Gm13347-201ENSMUST00000120298 1353 ntBASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 5330439B14Rik-201ENSMUST00000194811 1392 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 Drd1-202ENSMUST00000221470 3576 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 Pigo-201ENSMUST00000067481 3525 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 Osr2-204ENSMUST00000228152 1324 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 Tbcd-201ENSMUST00000103013 3906 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 Zfp280d-205ENSMUST00000183468 1834 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 Prkag2-202ENSMUST00000076306 2838 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 Gm5150-201ENSMUST00000108347 913 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 Gsg1-202ENSMUST00000111909 1087 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 Gm13916-201ENSMUST00000117368 628 ntBASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 Gm11941-201ENSMUST00000119904 610 ntBASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 Rpsa-ps12-201ENSMUST00000120596 892 ntBASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 Rab15-203ENSMUST00000121716 739 ntTSL 3 BASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 Gm13523-201ENSMUST00000151820 488 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 4930557F10Rik-201ENSMUST00000155432 630 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 Gm16570-201ENSMUST00000161951 436 ntBASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 U2af1l4-234ENSMUST00000171850 564 ntTSL 5 BASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 1110059E24Rik-208ENSMUST00000179768 962 ntAPPRIS ALT2 TSL 2 BASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 Gm6905-201ENSMUST00000205729 511 ntBASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 Gm45113-201ENSMUST00000207518 165 ntBASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 Lgals4-207ENSMUST00000208971 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 Gm32352-201ENSMUST00000212465 688 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 AC134860.1-201ENSMUST00000224867 660 ntBASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 Ntng1-201ENSMUST00000051253 327 ntBASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 Rpp38-201ENSMUST00000062672 1042 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 Msh5-202ENSMUST00000097338 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 Nom1-201ENSMUST00000001611 9219 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 Rbms1-201ENSMUST00000028347 4436 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 Slamf7-204ENSMUST00000194531 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 Phactr1-206ENSMUST00000131942 2056 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 St6galnac5-201ENSMUST00000044278 5667 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 Gm13553-201ENSMUST00000133025 1970 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3bQ3ULL6 4930588G17Rik-201ENSMUST00000208075 1474 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Upf3bQ3ULL6 Cd72-205ENSMUST00000107926 1419 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
Upf3bQ3ULL6 Cd72-203ENSMUST00000098105 1420 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Upf3bQ3ULL6 Hyal3-202ENSMUST00000148440 1380 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
Upf3bQ3ULL6 Got1l1-201ENSMUST00000038174 1356 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Upf3bQ3ULL6 Ephb2-203ENSMUST00000105846 3653 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
Upf3bQ3ULL6 Grpel2-201ENSMUST00000062991 4030 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Upf3bQ3ULL6 Gid8-202ENSMUST00000078687 2063 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Upf3bQ3ULL6 Fn1-214ENSMUST00000188894 8043 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Upf3bQ3ULL6 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Upf3bQ3ULL6 Gngt2-207ENSMUST00000107714 558 ntAPPRIS P1 TSL 3 BASIC12.46□□□□□ -0.41
Upf3bQ3ULL6 Rpl19-ps1-201ENSMUST00000121059 591 ntBASIC12.46□□□□□ -0.41
Upf3bQ3ULL6 Gm53-203ENSMUST00000143887 757 ntTSL 3 BASIC12.46□□□□□ -0.41
Upf3bQ3ULL6 Gm11753-201ENSMUST00000151091 396 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Upf3bQ3ULL6 Hspb9-202ENSMUST00000169833 726 ntAPPRIS P2 BASIC12.46□□□□□ -0.41
Upf3bQ3ULL6 Igfbp4-201ENSMUST00000017637 3831 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Upf3bQ3ULL6 Vmn1r205-201ENSMUST00000185475 951 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
Upf3bQ3ULL6 Gm37246-201ENSMUST00000192665 835 ntBASIC12.46□□□□□ -0.41
Upf3bQ3ULL6 Gm7841-201ENSMUST00000122108 1629 ntBASIC12.46□□□□□ -0.41
Upf3bQ3ULL6 Egfem1-202ENSMUST00000119598 2687 ntAPPRIS P4 TSL 1 (best) BASIC12.46□□□□□ -0.41
Upf3bQ3ULL6 Prdx2-202ENSMUST00000109733 1590 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.42
Upf3bQ3ULL6 St6galnac6-201ENSMUST00000072111 2277 ntAPPRIS P3 TSL 5 BASIC12.46□□□□□ -0.42
Upf3bQ3ULL6 Trpm1-210ENSMUST00000205731 2575 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Upf3bQ3ULL6 Rragd-202ENSMUST00000084747 4295 ntTSL 5 BASIC12.46□□□□□ -0.42
Upf3bQ3ULL6 Phka2-203ENSMUST00000112377 3947 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.42
Upf3bQ3ULL6 Cbx7-203ENSMUST00000109616 2899 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Upf3bQ3ULL6 Rbpsuh-rs3-201ENSMUST00000182751 1441 ntBASIC12.45□□□□□ -0.42
Upf3bQ3ULL6 Abcc10-204ENSMUST00000167360 4866 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3bQ3ULL6 Rspry1-201ENSMUST00000060389 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3bQ3ULL6 AF529169-201ENSMUST00000044491 7202 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3bQ3ULL6 Brsk1-204ENSMUST00000205666 1398 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3bQ3ULL6 Eif5a2-201ENSMUST00000060500 5027 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3bQ3ULL6 BC003331-203ENSMUST00000097546 3174 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
Upf3bQ3ULL6 Stat5b-202ENSMUST00000107358 5213 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3bQ3ULL6 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
Upf3bQ3ULL6 Psg23-201ENSMUST00000057810 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3bQ3ULL6 Rab19-201ENSMUST00000031986 1575 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3bQ3ULL6 Nr4a2-202ENSMUST00000112627 2400 ntTSL 5 BASIC12.45□□□□□ -0.42
Upf3bQ3ULL6 Gm13809-201ENSMUST00000117921 597 ntBASIC12.45□□□□□ -0.42
Upf3bQ3ULL6 Lamr1-ps1-201ENSMUST00000119759 874 ntBASIC12.45□□□□□ -0.42
Upf3bQ3ULL6 Gm12201-201ENSMUST00000120657 1234 ntBASIC12.45□□□□□ -0.42
Upf3bQ3ULL6 Mir5120-201ENSMUST00000175020 78 ntBASIC12.45□□□□□ -0.42
Upf3bQ3ULL6 Rpl31-202ENSMUST00000178079 487 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
Upf3bQ3ULL6 Trav13d-3-201ENSMUST00000179512 391 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
Upf3bQ3ULL6 Trav13n-3-201ENSMUST00000179580 337 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
Upf3bQ3ULL6 Gm27175-201ENSMUST00000183759 606 ntTSL 3 BASIC12.45□□□□□ -0.42
Upf3bQ3ULL6 Gm27223-201ENSMUST00000184653 606 ntTSL 3 BASIC12.45□□□□□ -0.42
Upf3bQ3ULL6 Gm27184-201ENSMUST00000185095 607 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3bQ3ULL6 Gm38151-201ENSMUST00000195085 289 ntBASIC12.45□□□□□ -0.42
Upf3bQ3ULL6 Gm18065-201ENSMUST00000221395 526 ntBASIC12.45□□□□□ -0.42
Upf3bQ3ULL6 CT009713.8-201ENSMUST00000225448 560 ntBASIC12.45□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 43.7 ms