Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 9230114K14Rik-203ENSMUST00000199547 437 ntTSL 3 BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Gm44711-201ENSMUST00000205414 1264 ntBASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Ggps1-204ENSMUST00000221713 667 ntTSL 3 BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Olfr605-201ENSMUST00000080660 1011 ntAPPRIS P1 BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Gm6994-201ENSMUST00000088880 1163 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Anxa7-202ENSMUST00000100844 2904 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Slc37a1-202ENSMUST00000171233 2929 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Odf2l-201ENSMUST00000029920 2239 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 AC126257.1-201ENSMUST00000213195 1536 ntBASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Gm9544-201ENSMUST00000223349 2482 ntBASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Ccnb1-201ENSMUST00000072119 2489 ntAPPRIS P2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Gm43267-201ENSMUST00000199664 1796 ntBASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Gm43860-201ENSMUST00000201742 2705 ntBASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Stra6-202ENSMUST00000085677 2725 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Abcc10-204ENSMUST00000167360 4866 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Rgs11-201ENSMUST00000025020 2006 ntAPPRIS P2 TSL 2 BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Fam45a-202ENSMUST00000119633 2267 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Rasal2-204ENSMUST00000132699 4013 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Angpt4-201ENSMUST00000028955 2335 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Olfr1344-202ENSMUST00000218906 2590 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Gm42913-201ENSMUST00000197936 1853 ntBASIC11.02□□□□□ -0.65
Trim3Q9R1R2 4933440M02Rik-202ENSMUST00000205794 1601 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 1810014B01Rik-202ENSMUST00000218095 1622 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Pnp2-201ENSMUST00000095925 1372 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Akap12-201ENSMUST00000045730 6195 ntAPPRIS P2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Scaf4-202ENSMUST00000163419 4169 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Ttc25-201ENSMUST00000006976 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Mfsd4a-204ENSMUST00000126927 2422 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Gm20649-201ENSMUST00000160950 2740 ntTSL 2 BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Abca3-202ENSMUST00000079594 6380 ntAPPRIS P2 TSL 5 BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Nfia-202ENSMUST00000075448 9526 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Cacna1c-205ENSMUST00000112825 7577 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Ccdc189-201ENSMUST00000072155 2536 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Jhy-201ENSMUST00000034521 3074 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Kif2a-202ENSMUST00000117423 2023 ntTSL 5 BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Ngef-202ENSMUST00000068681 3109 ntAPPRIS P4 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 LMLN2-201ENSMUST00000224691 2342 ntAPPRIS P5 BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Ptprh-201ENSMUST00000049113 3495 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Sypl2-201ENSMUST00000141387 4090 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Gnas-209ENSMUST00000109088 3519 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Gnas-201ENSMUST00000080493 3519 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Gm7857-201ENSMUST00000117957 358 ntBASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Gm15172-201ENSMUST00000118945 1046 ntBASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Gm44793-201ENSMUST00000136923 582 ntTSL 2 BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Gm13966-201ENSMUST00000148420 832 ntTSL 3 BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Tnni2-206ENSMUST00000149529 768 ntAPPRIS P1 TSL 2 BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Gm16099-202ENSMUST00000151873 660 ntTSL 5 BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Gm27627-201ENSMUST00000183644 150 ntBASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Nr1h2-ps-201ENSMUST00000183844 478 ntBASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Pmvk-203ENSMUST00000184515 1156 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Gm43962-201ENSMUST00000203898 190 ntBASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Gm45021-201ENSMUST00000204521 369 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Gm17931-201ENSMUST00000208132 634 ntBASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Gm45799-208ENSMUST00000211054 490 ntAPPRIS P2 TSL 3 BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 AC107638.1-201ENSMUST00000213690 1061 ntBASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Dnajc4-201ENSMUST00000025915 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Yeats2-202ENSMUST00000115560 6116 ntAPPRIS ALT2 TSL 5 BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Myom3-201ENSMUST00000105854 5575 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Nrros-202ENSMUST00000115163 3559 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 H2-M2-201ENSMUST00000016427 1550 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 AC123619.2-202ENSMUST00000225097 1568 ntBASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Cog4-201ENSMUST00000034203 2737 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Ntng2-202ENSMUST00000071201 1881 ntTSL 5 BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Gm13187-202ENSMUST00000133873 1321 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 4930554G24Rik-201ENSMUST00000126260 1603 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Gm8155-201ENSMUST00000216363 1612 ntBASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Bpi-201ENSMUST00000065039 1926 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Gcc1-202ENSMUST00000090511 4650 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Ywhaz-203ENSMUST00000110361 2285 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Wif1-201ENSMUST00000020439 2294 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Gramd2-201ENSMUST00000098661 1368 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Mfsd14b-203ENSMUST00000155487 3832 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 C2cd5-213ENSMUST00000204655 3526 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Nr5a1-201ENSMUST00000028084 2947 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Pmaip1-201ENSMUST00000025399 2646 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Cyp26b1-202ENSMUST00000168003 4170 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Cyp26b1-201ENSMUST00000077705 4157 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Il1rap-206ENSMUST00000174202 2306 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Fli1-201ENSMUST00000016231 3318 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim3Q9R1R2 Ftsj1-201ENSMUST00000033513 3425 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Trim3Q9R1R2 Smndc1-201ENSMUST00000025997 2125 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Trim3Q9R1R2 Grm1-203ENSMUST00000105561 4435 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Trim3Q9R1R2 AC138329.2-201ENSMUST00000225579 1842 ntBASIC11□□□□□ -0.65
Trim3Q9R1R2 Myo7a-201ENSMUST00000084979 6849 ntTSL 1 (best) BASIC11□□□□□ -0.65
Trim3Q9R1R2 Ift46-201ENSMUST00000002099 4169 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Trim3Q9R1R2 Agrn-203ENSMUST00000105575 7262 ntTSL 5 BASIC11□□□□□ -0.65
Trim3Q9R1R2 Gm9796-201ENSMUST00000062249 2250 ntBASIC11□□□□□ -0.65
Trim3Q9R1R2 Gfm1-201ENSMUST00000077271 4078 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Trim3Q9R1R2 Zdhhc20-201ENSMUST00000089473 5186 ntAPPRIS P2 TSL 1 (best) BASIC11□□□□□ -0.65
Trim3Q9R1R2 Plxna4os1-201ENSMUST00000150314 1977 ntTSL 1 (best) BASIC11□□□□□ -0.65
Trim3Q9R1R2 Triobp-204ENSMUST00000109690 7023 ntAPPRIS P4 TSL 1 (best) BASIC11□□□□□ -0.65
Trim3Q9R1R2 Dcun1d2-201ENSMUST00000045366 2748 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Trim3Q9R1R2 Gm4909-201ENSMUST00000118749 794 ntBASIC11□□□□□ -0.65
Trim3Q9R1R2 Gm12690-201ENSMUST00000132108 354 ntTSL 3 BASIC11□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 42.8 ms