Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Gm9192-201ENSMUST00000183221 985 ntBASIC11.98□□□□□ -0.49
Vps28Q9D1C8 Gm6450-201ENSMUST00000200896 574 ntBASIC11.98□□□□□ -0.49
Vps28Q9D1C8 Gm21221-201ENSMUST00000202876 1073 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Vps28Q9D1C8 Emp3-203ENSMUST00000210297 601 ntAPPRIS P1 TSL 3 BASIC11.98□□□□□ -0.49
Vps28Q9D1C8 Psmg2-201ENSMUST00000025418 1059 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Vps28Q9D1C8 Il1f10-201ENSMUST00000058056 538 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Vps28Q9D1C8 Lcn6-201ENSMUST00000059693 1254 ntTSL 5 BASIC11.98□□□□□ -0.49
Vps28Q9D1C8 Gm9785-201ENSMUST00000062642 1006 ntBASIC11.98□□□□□ -0.49
Vps28Q9D1C8 Apc-201ENSMUST00000066133 1185 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Vps28Q9D1C8 Rpl9-ps6-201ENSMUST00000078034 691 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
Vps28Q9D1C8 Scmh1-201ENSMUST00000000087 3353 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
Vps28Q9D1C8 Tunar-201ENSMUST00000180458 3282 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Vps28Q9D1C8 Rnf144a-202ENSMUST00000062149 4812 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Vps28Q9D1C8 Ptprt-203ENSMUST00000109443 12112 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Vps28Q9D1C8 Slc2a4-201ENSMUST00000018710 2524 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Vps28Q9D1C8 Pdp1-202ENSMUST00000095144 2506 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
Vps28Q9D1C8 Epb41l2-204ENSMUST00000217929 3621 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Vps28Q9D1C8 Ercc2-201ENSMUST00000062831 3578 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Vps28Q9D1C8 Npr2-202ENSMUST00000107874 3480 ntTSL 5 BASIC11.98□□□□□ -0.49
Vps28Q9D1C8 Klhl3-202ENSMUST00000160860 7149 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Vps28Q9D1C8 Gm29609-201ENSMUST00000101411 3223 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
Vps28Q9D1C8 Fam53c-201ENSMUST00000049281 4475 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Vps28Q9D1C8 Gm11924-201ENSMUST00000152306 1750 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Themis3-201ENSMUST00000024914 1797 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Frmd3-201ENSMUST00000084474 4136 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Tfdp1-201ENSMUST00000170909 1700 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Cyp2s1-201ENSMUST00000043314 2745 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Tut1-201ENSMUST00000096239 2747 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Cd276-202ENSMUST00000165365 3603 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Mmel1-204ENSMUST00000105635 2592 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Coch-201ENSMUST00000085412 2456 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Trpc7-207ENSMUST00000173817 2406 ntTSL 5 BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Gm13910-201ENSMUST00000121752 1428 ntBASIC11.97□□□□□ -0.49
Vps28Q9D1C8 F10-205ENSMUST00000152034 1449 ntTSL 5 BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Arhgap33-201ENSMUST00000044338 4280 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Pcdhgb7-201ENSMUST00000194928 4713 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Gm13916-201ENSMUST00000117368 628 ntBASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Mia-202ENSMUST00000121848 572 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Zfp629-204ENSMUST00000128731 823 ntTSL 3 BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Gm3948-201ENSMUST00000147795 421 ntTSL 3 BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Gm15609-201ENSMUST00000155610 2960 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Rps19-ps9-201ENSMUST00000161787 414 ntBASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Gm6397-201ENSMUST00000161973 1069 ntBASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Snrpa-206ENSMUST00000163311 1288 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Hspb9-202ENSMUST00000169833 726 ntAPPRIS P2 BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Gm17231-203ENSMUST00000170133 637 ntTSL 3 BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Gm28262-201ENSMUST00000185463 477 ntTSL 5 BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Gm35060-201ENSMUST00000207669 825 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Gm8959-201ENSMUST00000213150 571 ntBASIC11.97□□□□□ -0.49
Vps28Q9D1C8 AC159819.2-201ENSMUST00000216151 342 ntBASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Mcee-201ENSMUST00000037205 828 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 4921522P10Rik-201ENSMUST00000048606 2101 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Gm7551-201ENSMUST00000089593 1074 ntBASIC11.97□□□□□ -0.49
Vps28Q9D1C8 R3hdm2-210ENSMUST00000164831 2937 ntTSL 5 BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Cdrt4os1-201ENSMUST00000130177 2090 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Gm43984-201ENSMUST00000204572 2864 ntBASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Brd3-210ENSMUST00000164296 2791 ntAPPRIS P3 TSL 5 BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Gm14685-202ENSMUST00000179117 2773 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Plcd1-201ENSMUST00000010804 2657 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Exoc3l4-209ENSMUST00000222897 2665 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Leprot-201ENSMUST00000030254 1898 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Cd300lf-201ENSMUST00000051264 1864 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Specc1-213ENSMUST00000202179 6676 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 BC048403-201ENSMUST00000065600 3123 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Daxx-207ENSMUST00000174146 2424 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 3830432H09Rik-202ENSMUST00000188909 2414 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Ift22-205ENSMUST00000200157 3071 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Smtn-204ENSMUST00000110011 3020 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Taf6-202ENSMUST00000110936 2308 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Rgs6-211ENSMUST00000191107 1621 ntTSL 5 BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Rad9b-201ENSMUST00000049009 1631 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Vps28Q9D1C8 Strada-202ENSMUST00000103072 1517 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Vps28Q9D1C8 Lgr5-206ENSMUST00000172806 2652 ntTSL 5 BASIC11.96□□□□□ -0.49
Vps28Q9D1C8 Bad-201ENSMUST00000025910 1451 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.49
Vps28Q9D1C8 Stat5b-202ENSMUST00000107358 5213 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Vps28Q9D1C8 Hk3-203ENSMUST00000126234 3032 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Vps28Q9D1C8 Dmbt1-201ENSMUST00000084509 6243 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.49
Vps28Q9D1C8 E2f8-202ENSMUST00000119223 3499 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Vps28Q9D1C8 Sin3a-206ENSMUST00000168177 5086 ntAPPRIS ALT1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Vps28Q9D1C8 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Vps28Q9D1C8 Gm15566-201ENSMUST00000121130 590 ntBASIC11.96□□□□□ -0.49
Vps28Q9D1C8 4930595D18Rik-201ENSMUST00000121608 818 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Vps28Q9D1C8 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.49
Vps28Q9D1C8 Gm13587-201ENSMUST00000152645 366 ntTSL 5 BASIC11.96□□□□□ -0.49
Vps28Q9D1C8 Gm22902-201ENSMUST00000158488 302 ntBASIC11.96□□□□□ -0.49
Vps28Q9D1C8 Gm28937-201ENSMUST00000185413 695 ntBASIC11.96□□□□□ -0.49
Vps28Q9D1C8 Gm4131-201ENSMUST00000186010 1264 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
Vps28Q9D1C8 Gm29400-201ENSMUST00000187208 695 ntBASIC11.96□□□□□ -0.49
Vps28Q9D1C8 Gm28662-201ENSMUST00000188446 695 ntBASIC11.96□□□□□ -0.49
Vps28Q9D1C8 Gm28251-201ENSMUST00000188835 695 ntBASIC11.96□□□□□ -0.49
Vps28Q9D1C8 Ak6-205ENSMUST00000190729 1184 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Vps28Q9D1C8 Gm37986-201ENSMUST00000193285 383 ntBASIC11.96□□□□□ -0.49
Vps28Q9D1C8 Gm37318-201ENSMUST00000194325 695 ntBASIC11.96□□□□□ -0.49
Vps28Q9D1C8 Gm38017-201ENSMUST00000194768 695 ntBASIC11.96□□□□□ -0.49
Vps28Q9D1C8 Gm37287-201ENSMUST00000195449 695 ntBASIC11.96□□□□□ -0.49
Vps28Q9D1C8 Gm37793-201ENSMUST00000195548 695 ntBASIC11.96□□□□□ -0.49
Vps28Q9D1C8 Gm3786-201ENSMUST00000202659 378 ntBASIC11.96□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 63.2 ms