Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Ankrd7-201ENSMUST00000031489 1190 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Smc1aQ9CU62 Vps18-201ENSMUST00000037280 4054 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Smc1aQ9CU62 Svopl-202ENSMUST00000096040 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Smc1aQ9CU62 Tmem140-201ENSMUST00000074949 2614 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Smc1aQ9CU62 Rdh13-201ENSMUST00000008579 3034 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Smc1aQ9CU62 Serpina11-201ENSMUST00000074693 1447 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
Smc1aQ9CU62 Asap1-203ENSMUST00000110115 4535 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Smc1aQ9CU62 Tbc1d14-204ENSMUST00000130417 2665 ntTSL 5 BASIC13.11□□□□□ -0.31
Smc1aQ9CU62 Dcun1d3-202ENSMUST00000098080 3072 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Smc1aQ9CU62 Gm44260-201ENSMUST00000204946 2094 ntBASIC13.11□□□□□ -0.31
Smc1aQ9CU62 Syt15-202ENSMUST00000119693 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Smc1aQ9CU62 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Smc1aQ9CU62 Rnf133-201ENSMUST00000063548 1308 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Smc1aQ9CU62 Slc25a48-201ENSMUST00000021971 3374 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Smc1aQ9CU62 Tmcc1-210ENSMUST00000204353 2851 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Smc1aQ9CU62 Tmem47-201ENSMUST00000026760 4007 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Smc1aQ9CU62 Gm20721-201ENSMUST00000168292 1484 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Smc1aQ9CU62 Plagl2-201ENSMUST00000056924 5485 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Smc1aQ9CU62 Armc5-201ENSMUST00000044660 3834 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Smc1aQ9CU62 Egfr-202ENSMUST00000102884 2943 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Smc1aQ9CU62 Sel1l-210ENSMUST00000178462 6150 ntTSL 5 BASIC13.1□□□□□ -0.31
Smc1aQ9CU62 Zscan10-201ENSMUST00000095595 2698 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Smc1aQ9CU62 Mfsd4a-204ENSMUST00000126927 2422 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Smc1aQ9CU62 Gtf2ird2-201ENSMUST00000016086 3482 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Smc1aQ9CU62 Fam126a-203ENSMUST00000115109 2195 ntTSL 5 BASIC13.1□□□□□ -0.31
Smc1aQ9CU62 Taf6l-202ENSMUST00000010249 848 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Smc1aQ9CU62 Gm13408-201ENSMUST00000119822 798 ntBASIC13.1□□□□□ -0.31
Smc1aQ9CU62 Gm13935-201ENSMUST00000121859 798 ntBASIC13.1□□□□□ -0.31
Smc1aQ9CU62 Gm1667-201ENSMUST00000151651 558 ntTSL 3 BASIC13.1□□□□□ -0.31
Smc1aQ9CU62 Ccdc127-205ENSMUST00000162672 677 ntTSL 3 BASIC13.1□□□□□ -0.31
Smc1aQ9CU62 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC13.1□□□□□ -0.31
Smc1aQ9CU62 AC163667.3-201ENSMUST00000225774 222 ntBASIC13.1□□□□□ -0.31
Smc1aQ9CU62 Prr13-201ENSMUST00000023810 1224 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Smc1aQ9CU62 Cryab-201ENSMUST00000034562 946 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Smc1aQ9CU62 Apc-201ENSMUST00000066133 1185 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Smc1aQ9CU62 Nudt7-201ENSMUST00000066514 935 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Smc1aQ9CU62 Wfdc21-201ENSMUST00000070832 434 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Smc1aQ9CU62 Kcnma1-205ENSMUST00000145596 12094 ntAPPRIS ALT2 BASIC13.1□□□□□ -0.31
Smc1aQ9CU62 Hcn1-201ENSMUST00000006991 14141 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Smc1aQ9CU62 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Smc1aQ9CU62 Gm33677-201ENSMUST00000220074 2765 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Smc1aQ9CU62 Dctn1-205ENSMUST00000113919 4292 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Smc1aQ9CU62 Nuak2-201ENSMUST00000072177 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Smc1aQ9CU62 Slc37a4-207ENSMUST00000215420 2128 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Smc1aQ9CU62 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Smc1aQ9CU62 Gm10545-201ENSMUST00000097612 4969 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Smc1aQ9CU62 Col6a6-202ENSMUST00000098441 8781 ntAPPRIS P2 TSL 5 BASIC13.1□□□□□ -0.31
Smc1aQ9CU62 Gm12968-201ENSMUST00000138291 1454 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Smc1aQ9CU62 Gm18227-201ENSMUST00000211082 1468 ntBASIC13.1□□□□□ -0.31
Smc1aQ9CU62 5031434O11Rik-201ENSMUST00000180404 3731 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Smc1aQ9CU62 Hr-205ENSMUST00000163060 5278 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Smc1aQ9CU62 Pbrm1-208ENSMUST00000112098 6566 ntTSL 5 BASIC13.1□□□□□ -0.31
Smc1aQ9CU62 Ivns1abp-202ENSMUST00000097543 3337 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Smc1aQ9CU62 Bpi-202ENSMUST00000109499 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Gm43267-201ENSMUST00000199664 1796 ntBASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Extl3-201ENSMUST00000022550 5977 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Plpbp-205ENSMUST00000209856 3954 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Txndc12-201ENSMUST00000030296 1359 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Parp11-202ENSMUST00000112191 3414 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 P2ry1-201ENSMUST00000029331 3886 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Cyp26b1-202ENSMUST00000168003 4170 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Wdr13-201ENSMUST00000033506 4183 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Cyp26b1-201ENSMUST00000077705 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Slc22a4-201ENSMUST00000020586 2263 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Slc39a14-202ENSMUST00000068044 4926 ntAPPRIS P3 TSL 5 BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Pex26-201ENSMUST00000088561 4093 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Bbs1-201ENSMUST00000053506 5581 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Stk10-201ENSMUST00000102821 5026 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Trav13-1-201ENSMUST00000103651 331 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Tm2d3-203ENSMUST00000107495 1003 ntAPPRIS P4 TSL 5 BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Crispld2-202ENSMUST00000108972 2928 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Gm11450-201ENSMUST00000121144 333 ntBASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Gm12298-201ENSMUST00000126999 731 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Gm12130-201ENSMUST00000133599 639 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Gm11290-203ENSMUST00000147811 314 ntTSL 5 BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Gm5616-201ENSMUST00000165252 384 ntBASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Gm8741-201ENSMUST00000174736 384 ntBASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Chtf8-203ENSMUST00000176090 615 ntTSL 5 BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Rbm10-207ENSMUST00000177738 2790 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Gm7207-201ENSMUST00000211575 1067 ntBASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Kdelr1-201ENSMUST00000002855 1599 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Exog-201ENSMUST00000035094 3832 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 1700028J19Rik-201ENSMUST00000037220 1245 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 S100a1-201ENSMUST00000060738 677 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Rbm10-201ENSMUST00000064911 2793 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Cox5a-201ENSMUST00000000090 645 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Bckdk-201ENSMUST00000071056 3405 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Plcd4-206ENSMUST00000113750 2692 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Syk-201ENSMUST00000055087 5122 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Ascc2-202ENSMUST00000109930 4844 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Rprd1b-203ENSMUST00000109518 4399 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Ctsd-201ENSMUST00000066401 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Gm28719-201ENSMUST00000187779 1757 ntBASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Tmem159-201ENSMUST00000033210 1484 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Wif1-201ENSMUST00000020439 2294 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Zfp810-201ENSMUST00000086278 3238 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Otof-202ENSMUST00000114747 6881 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Smc1aQ9CU62 Sertad2-201ENSMUST00000093292 5647 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 67.4 ms