Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Ighv1-61-201ENSMUST00000103531 351 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Use1-202ENSMUST00000110053 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Gm15856-201ENSMUST00000124853 1162 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 9430093N23Rik-201ENSMUST00000152494 515 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Spdye4a-202ENSMUST00000160502 1245 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Gm8459-201ENSMUST00000162504 760 ntBASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Gm17877-201ENSMUST00000192578 814 ntBASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Gm37981-201ENSMUST00000194280 535 ntBASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Abhd4-208ENSMUST00000199338 868 ntTSL 3 BASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Gm35549-202ENSMUST00000203656 1009 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Olfr567-ps1-201ENSMUST00000210349 857 ntBASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Gm2875-201ENSMUST00000211333 360 ntBASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Fxyd2-211ENSMUST00000216289 668 ntTSL 5 BASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Cplx3-203ENSMUST00000217015 540 ntTSL 2 BASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Gm9661-201ENSMUST00000221611 1122 ntBASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 AC132901.1-201ENSMUST00000224345 508 ntBASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Col14a1-202ENSMUST00000110217 6457 ntAPPRIS ALT1 TSL 5 BASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Oxsm-202ENSMUST00000112624 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Gm45428-201ENSMUST00000209619 1789 ntBASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Alg12-201ENSMUST00000043087 1793 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Prr3-203ENSMUST00000172429 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Vps9d1-202ENSMUST00000118279 2696 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Nckap5l-201ENSMUST00000023747 4853 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Ctif-201ENSMUST00000165559 6173 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Mettl13-201ENSMUST00000028017 4541 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Ctnnbl1-201ENSMUST00000029178 2442 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Slc19a1-209ENSMUST00000144234 2309 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Eif4a2-223ENSMUST00000168891 2203 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 AC138329.2-201ENSMUST00000225579 1842 ntBASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Atp8a2-202ENSMUST00000131670 1725 ntTSL 2 BASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Gm1840-201ENSMUST00000051687 1432 ntBASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Hdac5-201ENSMUST00000008999 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Tbc1d22bos-202ENSMUST00000163069 1349 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Tns2-202ENSMUST00000169627 4707 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Il21r-201ENSMUST00000033000 2499 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Col6a2-201ENSMUST00000001181 3949 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Rapgef2-201ENSMUST00000118100 6573 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 AC166836.1-201ENSMUST00000219933 1795 ntBASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Arhgap27-204ENSMUST00000107024 3976 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 4933412E12Rik-201ENSMUST00000217853 1698 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Gm18983-201ENSMUST00000222884 2729 ntBASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Rai1-203ENSMUST00000102688 6921 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Synpo-211ENSMUST00000155195 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Snhg18-201ENSMUST00000181536 1486 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Mfap3l-202ENSMUST00000160719 6335 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Shisa9-201ENSMUST00000023138 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sf3b1Q99NB9 Krtap4-6-201ENSMUST00000100476 918 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Myl2-203ENSMUST00000111751 889 ntAPPRIS P1 TSL 3 BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Olfr269-ps1-201ENSMUST00000120783 302 ntBASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Gm15985-201ENSMUST00000137731 343 ntTSL 3 BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Gm13830-203ENSMUST00000148916 247 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Agtpbp1-216ENSMUST00000168821 721 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Gm10320-201ENSMUST00000170205 527 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Gm10807-201ENSMUST00000177134 795 ntBASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Spdye4c-203ENSMUST00000178601 1020 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 7530416G11Rik-201ENSMUST00000178942 1161 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 9930004E17Rik-201ENSMUST00000180031 498 ntBASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Ly6e-203ENSMUST00000185861 838 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Gm34023-201ENSMUST00000195539 217 ntBASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Gm43058-201ENSMUST00000197645 625 ntBASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 6430531B16Rik-204ENSMUST00000209335 898 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Gm45285-201ENSMUST00000210418 749 ntTSL 3 BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 AC159462.1-201ENSMUST00000214822 687 ntTSL 5 BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 AC165260.2-203ENSMUST00000224237 336 ntBASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Prrxl1-205ENSMUST00000228878 723 ntBASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Olfr1350-201ENSMUST00000070985 927 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Lce1e-201ENSMUST00000090867 711 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 1700082M22Rik-201ENSMUST00000067136 2022 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Tle1-201ENSMUST00000030095 2569 ntTSL 5 BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Galnt11-202ENSMUST00000114950 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Dip2a-202ENSMUST00000105417 6383 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Sin3b-201ENSMUST00000004494 4115 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Prkag3-206ENSMUST00000188073 2832 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Tbrg1-201ENSMUST00000117654 1984 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Cnot7-211ENSMUST00000149992 2982 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Enah-201ENSMUST00000078719 2889 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Eogt-201ENSMUST00000054344 4424 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Gpr176-201ENSMUST00000039160 3899 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Ebf2-202ENSMUST00000176029 2784 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Ccdc15-204ENSMUST00000216042 1669 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Orc5-201ENSMUST00000030872 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Lrrc3-201ENSMUST00000057608 4296 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Ak4-202ENSMUST00000106945 4175 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Fam161a-203ENSMUST00000109557 1947 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Tnk2-205ENSMUST00000115124 4424 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Gm9195-201ENSMUST00000208955 8870 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Prss47-202ENSMUST00000203968 1353 ntAPPRIS P5 TSL 5 BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Mdh1b-201ENSMUST00000114094 1719 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Sorcs1-205ENSMUST00000209413 4398 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Gm19692-201ENSMUST00000203856 2084 ntBASIC12.38□□□□□ -0.43
Sf3b1Q99NB9 Akr1b10-202ENSMUST00000115051 1022 ntTSL 5 BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Gm16166-201ENSMUST00000118291 787 ntBASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Plekhg5-204ENSMUST00000118648 3818 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Gm9089-201ENSMUST00000122027 526 ntBASIC12.37□□□□□ -0.43
Sf3b1Q99NB9 Gm13182-201ENSMUST00000122241 312 ntBASIC12.37□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 34.5 ms