Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Mitd1-201ENSMUST00000027257 1231 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Trim28Q62318 n-R5s185-201ENSMUST00000083953 119 ntBASIC15.05■□□□□ -0
Trim28Q62318 n-R5s211-201ENSMUST00000093689 119 ntBASIC15.05■□□□□ -0
Trim28Q62318 4833422M21Rik-203ENSMUST00000181747 1365 ntTSL 1 (best) BASIC15.05■□□□□ -0
Trim28Q62318 Gm3765-201ENSMUST00000130985 1447 ntBASIC15.05■□□□□ -0
Trim28Q62318 Axin2-201ENSMUST00000052915 4260 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
Trim28Q62318 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
Trim28Q62318 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
Trim28Q62318 Lgsn-201ENSMUST00000062560 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Trim28Q62318 Stim1-209ENSMUST00000211457 2183 ntTSL 5 BASIC15.05■□□□□ -0
Trim28Q62318 Btrc-209ENSMUST00000224478 2194 ntBASIC15.05■□□□□ -0
Trim28Q62318 Ano1-201ENSMUST00000033393 4585 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
Trim28Q62318 Gigyf2-201ENSMUST00000027475 5724 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
Trim28Q62318 Hdac5-204ENSMUST00000107152 3788 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
Trim28Q62318 Nsun7-204ENSMUST00000202994 3632 ntTSL 1 (best) BASIC15.04■□□□□ -0
Trim28Q62318 Nme1-203ENSMUST00000135884 3181 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim28Q62318 Ppp1r18-202ENSMUST00000122899 2743 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Trim28Q62318 Gm1995-201ENSMUST00000220838 2602 ntBASIC15.04■□□□□ -0
Trim28Q62318 Csrnp3-207ENSMUST00000145598 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Trim28Q62318 4833439L19Rik-208ENSMUST00000153065 2502 ntTSL 5 BASIC15.04■□□□□ -0
Trim28Q62318 Gmeb1-201ENSMUST00000030733 2485 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim28Q62318 Lck-208ENSMUST00000167288 2074 ntTSL 5 BASIC15.04■□□□□ -0
Trim28Q62318 Lta4h-201ENSMUST00000016033 2029 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim28Q62318 4930484H19Rik-201ENSMUST00000218870 1737 ntTSL 1 (best) BASIC15.04■□□□□ -0
Trim28Q62318 Trim6-206ENSMUST00000214578 1506 ntTSL 5 BASIC15.04■□□□□ -0
Trim28Q62318 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Trim28Q62318 Rtbdn-202ENSMUST00000109740 1363 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Trim28Q62318 Eid3-201ENSMUST00000211623 1305 ntAPPRIS P1 BASIC15.04■□□□□ -0
Trim28Q62318 Sertad3-201ENSMUST00000068641 1329 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim28Q62318 Rabl2-202ENSMUST00000094056 1322 ntTSL 1 (best) BASIC15.04■□□□□ -0
Trim28Q62318 Ifna2-201ENSMUST00000105147 1032 ntAPPRIS P1 BASIC15.04■□□□□ -0
Trim28Q62318 Gm11675-201ENSMUST00000121873 832 ntBASIC15.04■□□□□ -0
Trim28Q62318 Gm17597-201ENSMUST00000181220 1115 ntTSL 1 (best) BASIC15.04■□□□□ -0
Trim28Q62318 Gm4895-201ENSMUST00000181646 1137 ntBASIC15.04■□□□□ -0
Trim28Q62318 Mrip-ps-201ENSMUST00000184613 940 ntBASIC15.04■□□□□ -0
Trim28Q62318 Ptbp2-210ENSMUST00000198403 389 ntTSL 1 (best) BASIC15.04■□□□□ -0
Trim28Q62318 Gm19091-201ENSMUST00000208120 978 ntBASIC15.04■□□□□ -0
Trim28Q62318 Gm15802-202ENSMUST00000209595 1094 ntTSL 5 BASIC15.04■□□□□ -0
Trim28Q62318 AC120394.2-201ENSMUST00000213905 702 ntTSL 5 BASIC15.04■□□□□ -0
Trim28Q62318 AC154826.1-201ENSMUST00000217369 498 ntTSL 5 BASIC15.04■□□□□ -0
Trim28Q62318 AC136986.1-201ENSMUST00000222829 380 ntTSL 2 BASIC15.04■□□□□ -0
Trim28Q62318 AC159002.1-201ENSMUST00000226714 924 ntBASIC15.04■□□□□ -0
Trim28Q62318 Hsd17b3-201ENSMUST00000039832 1131 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim28Q62318 Gm10334-201ENSMUST00000095999 876 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim28Q62318 6030458C11Rik-204ENSMUST00000228177 3156 ntBASIC15.04■□□□□ -0
Trim28Q62318 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim28Q62318 Ntm-201ENSMUST00000075069 3022 ntTSL 1 (best) BASIC15.04■□□□□ -0
Trim28Q62318 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim28Q62318 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim28Q62318 Sncaip-209ENSMUST00000179625 2568 ntTSL 5 BASIC15.04■□□□□ -0
Trim28Q62318 Rab3d-203ENSMUST00000122211 3886 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim28Q62318 Il1rap-206ENSMUST00000174202 2306 ntTSL 1 (best) BASIC15.04■□□□□ -0
Trim28Q62318 Zfpm2-201ENSMUST00000053467 4974 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim28Q62318 Dlg4-203ENSMUST00000108588 3457 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim28Q62318 Ube2v1-202ENSMUST00000109207 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim28Q62318 Rap1gap-201ENSMUST00000047243 3247 ntAPPRIS P3 TSL 5 BASIC15.04■□□□□ -0
Trim28Q62318 Grip2-201ENSMUST00000159684 3006 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Trim28Q62318 Terb1-201ENSMUST00000064576 2950 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim28Q62318 Pink1-202ENSMUST00000105816 1465 ntTSL 1 (best) BASIC15.03■□□□□ -0
Trim28Q62318 Gm15622-201ENSMUST00000143025 1464 ntTSL 5 BASIC15.03■□□□□ -0
Trim28Q62318 Fam3a-201ENSMUST00000015427 1427 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Trim28Q62318 Patl1-201ENSMUST00000061618 4221 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim28Q62318 Ddhd1-203ENSMUST00000111828 9802 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Trim28Q62318 Plch2-201ENSMUST00000105631 5053 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Trim28Q62318 Capzb-201ENSMUST00000030518 1390 ntTSL 1 (best) BASIC15.03■□□□□ -0
Trim28Q62318 Pex5-205ENSMUST00000112532 3148 ntAPPRIS P4 TSL 1 (best) BASIC15.03■□□□□ -0
Trim28Q62318 Atp13a1-201ENSMUST00000034326 3915 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim28Q62318 Kalrn-211ENSMUST00000114966 3857 ntTSL 5 BASIC15.03■□□□□ -0
Trim28Q62318 Ostm1-202ENSMUST00000105497 770 ntTSL 2 BASIC15.03■□□□□ -0
Trim28Q62318 Gm21844-201ENSMUST00000178699 663 ntTSL 3 BASIC15.03■□□□□ -0
Trim28Q62318 AU020206-201ENSMUST00000181224 656 ntTSL 2 BASIC15.03■□□□□ -0
Trim28Q62318 Gm43830-201ENSMUST00000198760 1067 ntBASIC15.03■□□□□ -0
Trim28Q62318 Mt1-202ENSMUST00000211807 1085 ntBASIC15.03■□□□□ -0
Trim28Q62318 Ttc27-201ENSMUST00000024882 2820 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim28Q62318 Pdik1l-201ENSMUST00000061234 4686 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim28Q62318 Gm13093-201ENSMUST00000126212 2485 ntTSL 1 (best) BASIC15.03■□□□□ -0
Trim28Q62318 Gm43174-201ENSMUST00000195914 2445 ntBASIC15.03■□□□□ -0
Trim28Q62318 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Trim28Q62318 Arid5a-203ENSMUST00000115031 3002 ntTSL 2 BASIC15.03■□□□□ -0
Trim28Q62318 AU022754-201ENSMUST00000180441 2976 ntTSL 1 (best) BASIC15.03■□□□□ -0
Trim28Q62318 Serinc4-202ENSMUST00000110613 2240 ntTSL 1 (best) BASIC15.02■□□□□ -0
Trim28Q62318 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
Trim28Q62318 Pbx1-208ENSMUST00000188912 3970 ntTSL 1 (best) BASIC15.02■□□□□ -0
Trim28Q62318 Trim46-202ENSMUST00000090924 2721 ntTSL 1 (best) BASIC15.02■□□□□ -0
Trim28Q62318 Oprm1-203ENSMUST00000056385 1440 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
Trim28Q62318 Gm13722-201ENSMUST00000117964 3066 ntBASIC15.02■□□□□ -0
Trim28Q62318 Fam189b-201ENSMUST00000041913 3083 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Trim28Q62318 Gm9915-201ENSMUST00000066196 1383 ntBASIC15.02■□□□□ -0
Trim28Q62318 Harbi1-202ENSMUST00000111322 1316 ntTSL 1 (best) BASIC15.02■□□□□ -0
Trim28Q62318 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC15.02■□□□□ -0
Trim28Q62318 Ighv1-58-201ENSMUST00000103529 351 ntAPPRIS P1 BASIC15.02■□□□□ -0
Trim28Q62318 Ralyl-202ENSMUST00000108373 267 ntTSL 5 BASIC15.02■□□□□ -0
Trim28Q62318 Rs1-202ENSMUST00000112368 731 ntTSL 3 BASIC15.02■□□□□ -0
Trim28Q62318 Gm9673-201ENSMUST00000119287 781 ntBASIC15.02■□□□□ -0
Trim28Q62318 Gm12274-201ENSMUST00000120062 385 ntBASIC15.02■□□□□ -0
Trim28Q62318 Gm13284-201ENSMUST00000121020 547 ntBASIC15.02■□□□□ -0
Trim28Q62318 Cfap100-204ENSMUST00000134224 849 ntTSL 1 (best) BASIC15.02■□□□□ -0
Trim28Q62318 Gm13703-201ENSMUST00000150705 449 ntTSL 2 BASIC15.02■□□□□ -0
Trim28Q62318 Gm10631-201ENSMUST00000153288 494 ntTSL 1 (best) BASIC15.02■□□□□ -0
Trim28Q62318 H2al1i-201ENSMUST00000164729 318 ntAPPRIS P1 BASIC15.02■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 30.2 ms