Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm5852-201ENSMUST00000194119 1021 ntBASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Gm5982-201ENSMUST00000196234 512 ntBASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Rpl36-ps9-201ENSMUST00000196458 277 ntBASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Gm21221-201ENSMUST00000202876 1073 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Gm44136-201ENSMUST00000203819 1106 ntBASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Gm5369-201ENSMUST00000217499 588 ntBASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Gm6867-201ENSMUST00000219165 425 ntBASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Rpl34-202ENSMUST00000079085 480 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Gm6580-201ENSMUST00000117504 1357 ntBASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Wapl-202ENSMUST00000090027 4185 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Gm13910-201ENSMUST00000121752 1428 ntBASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Synpo-202ENSMUST00000115318 4479 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Hsd3b4-201ENSMUST00000179429 1575 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Gm10681-203ENSMUST00000186215 1575 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Gm3836-201ENSMUST00000211377 1613 ntBASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Ccdc15-204ENSMUST00000216042 1669 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Rit2-203ENSMUST00000153060 1806 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 AC126257.2-201ENSMUST00000215507 2300 ntBASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Adgrg5-201ENSMUST00000074570 2802 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Spr-ps1-203ENSMUST00000187705 2892 ntBASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Aldh3a2-202ENSMUST00000074127 3091 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Xkr5-201ENSMUST00000055503 3176 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Grpel1-201ENSMUST00000031099 3528 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Scaf4-202ENSMUST00000163419 4169 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Jmjd1c-211ENSMUST00000174408 8377 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Jmjd1c-201ENSMUST00000051446 8382 ntAPPRIS P4 TSL 5 BASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Dgcr8-201ENSMUST00000009321 4320 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Fam214a-205ENSMUST00000215370 4205 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Rab14-201ENSMUST00000028238 3081 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Trim46-202ENSMUST00000090924 2721 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Mirt1-203ENSMUST00000181539 2259 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Wif1-201ENSMUST00000020439 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Cfap100-207ENSMUST00000165673 2072 ntAPPRIS P2 TSL 5 BASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Ctsd-201ENSMUST00000066401 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Fbxo39-201ENSMUST00000108504 1708 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Plet1-201ENSMUST00000114474 1689 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Wdr45-203ENSMUST00000115688 1510 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Gm45199-201ENSMUST00000207640 1507 ntBASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Rab13-202ENSMUST00000107373 1415 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Gm6211-201ENSMUST00000147973 4275 ntBASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Myl2-203ENSMUST00000111751 889 ntAPPRIS P1 TSL 3 BASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Asb8-202ENSMUST00000123626 1100 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Asb8-203ENSMUST00000123922 1162 ntAPPRIS P1 TSL 3 BASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Pabpc1l2a-ps-201ENSMUST00000128361 513 ntBASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Bcas3os2-201ENSMUST00000134305 661 ntTSL 5 BASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Gm26047-201ENSMUST00000157308 113 ntBASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Mir8093-201ENSMUST00000185043 137 ntBASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Gm26047-202ENSMUST00000198840 115 ntBASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Olfr1415-203ENSMUST00000204766 403 ntTSL 3 BASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Gm9445-201ENSMUST00000207454 1285 ntBASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Gm44968-201ENSMUST00000207652 1171 ntTSL 5 BASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Cox6a2-201ENSMUST00000033049 680 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Ly6g5c-201ENSMUST00000037849 509 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Smtn-204ENSMUST00000110011 3020 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Pla2g16-202ENSMUST00000136465 3048 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Slc37a1-202ENSMUST00000171233 2929 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Sez6l2-201ENSMUST00000106332 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Xpot-203ENSMUST00000218004 6005 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Pacsin1-201ENSMUST00000045896 4190 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Phldb2-201ENSMUST00000036355 5483 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Il1rap-206ENSMUST00000174202 2306 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Kcnd1-201ENSMUST00000009875 5287 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 9530077C05Rik-201ENSMUST00000058868 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Wdr17-211ENSMUST00000175915 4619 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Gtf2ird1-207ENSMUST00000111245 3299 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Olfr56-202ENSMUST00000102785 1930 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Nup210-201ENSMUST00000032179 7037 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Upf3bQ3ULL6 Rnf123-218ENSMUST00000178267 4309 ntAPPRIS P3 TSL 5 BASIC12.48□□□□□ -0.41
Upf3bQ3ULL6 Morf4l2-204ENSMUST00000113097 1825 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Upf3bQ3ULL6 Abi1-208ENSMUST00000139038 2899 ntAPPRIS ALT1 TSL 5 BASIC12.48□□□□□ -0.41
Upf3bQ3ULL6 Gm9129-201ENSMUST00000218173 1689 ntBASIC12.48□□□□□ -0.41
Upf3bQ3ULL6 Tsga10-202ENSMUST00000088072 3837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Upf3bQ3ULL6 Lnx1-201ENSMUST00000039744 2727 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Upf3bQ3ULL6 Plrg1-202ENSMUST00000122128 1608 ntTSL 5 BASIC12.48□□□□□ -0.41
Upf3bQ3ULL6 Grm1-201ENSMUST00000044306 6930 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
Upf3bQ3ULL6 Srsf5-205ENSMUST00000110356 1568 ntAPPRIS P3 TSL 5 BASIC12.48□□□□□ -0.41
Upf3bQ3ULL6 Trmt61b-202ENSMUST00000137830 2572 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Upf3bQ3ULL6 Cdc42ep2-201ENSMUST00000055458 1491 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Upf3bQ3ULL6 Sema3f-201ENSMUST00000080560 3395 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
Upf3bQ3ULL6 Rftn1-202ENSMUST00000113195 2385 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Upf3bQ3ULL6 Scamp5-201ENSMUST00000046587 3225 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Upf3bQ3ULL6 D130043K22Rik-201ENSMUST00000006893 4973 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Upf3bQ3ULL6 Eng-202ENSMUST00000113272 3021 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Upf3bQ3ULL6 Mbtps2-203ENSMUST00000112522 3891 ntTSL 2 BASIC12.48□□□□□ -0.41
Upf3bQ3ULL6 Mbtps2-208ENSMUST00000179062 3890 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
Upf3bQ3ULL6 Slc39a6-201ENSMUST00000070726 3882 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Upf3bQ3ULL6 Gltp-202ENSMUST00000112212 799 ntTSL 5 BASIC12.48□□□□□ -0.41
Upf3bQ3ULL6 Gm13263-201ENSMUST00000121271 838 ntBASIC12.48□□□□□ -0.41
Upf3bQ3ULL6 Gm1667-201ENSMUST00000151651 558 ntTSL 3 BASIC12.48□□□□□ -0.41
Upf3bQ3ULL6 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Upf3bQ3ULL6 1110038B12Rik-208ENSMUST00000174714 520 ntTSL 2 BASIC12.48□□□□□ -0.41
Upf3bQ3ULL6 Gm44867-201ENSMUST00000205675 530 ntTSL 3 BASIC12.48□□□□□ -0.41
Upf3bQ3ULL6 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC12.48□□□□□ -0.41
Upf3bQ3ULL6 Olfr368-202ENSMUST00000217299 1200 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Upf3bQ3ULL6 AC134869.4-202ENSMUST00000224350 837 ntBASIC12.48□□□□□ -0.41
Upf3bQ3ULL6 Mettl6-204ENSMUST00000227595 1027 ntBASIC12.48□□□□□ -0.41
Upf3bQ3ULL6 Plekha7-202ENSMUST00000181981 4633 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Upf3bQ3ULL6 Acsm1-201ENSMUST00000047929 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 133.9 ms