Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 1700029P11Rik-201ENSMUST00000074608 1024 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Upf3aQ3ULJ3 n-R5s185-201ENSMUST00000083953 119 ntBASIC12.28□□□□□ -0.44
Upf3aQ3ULJ3 Adamts5-201ENSMUST00000023611 8091 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Upf3aQ3ULJ3 Kif3b-201ENSMUST00000028977 5635 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Upf3aQ3ULJ3 Ndufaf1-203ENSMUST00000110802 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Upf3aQ3ULJ3 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Upf3aQ3ULJ3 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Upf3aQ3ULJ3 Adam19-201ENSMUST00000011400 6383 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Upf3aQ3ULJ3 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Upf3aQ3ULJ3 Rbm48-201ENSMUST00000042753 2368 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Upf3aQ3ULJ3 Gm2916-202ENSMUST00000181779 1702 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Upf3aQ3ULJ3 Xkr8-201ENSMUST00000045550 4245 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Upf3aQ3ULJ3 Ttyh1-202ENSMUST00000079415 2882 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Upf3aQ3ULJ3 Dcaf11-202ENSMUST00000117236 2538 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Upf3aQ3ULJ3 Gatb-202ENSMUST00000107672 1820 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Upf3aQ3ULJ3 Pla2g15-204ENSMUST00000212963 2578 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Upf3aQ3ULJ3 Acly-203ENSMUST00000107389 4426 ntAPPRIS ALT1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Upf3aQ3ULJ3 Tcf4-254ENSMUST00000202674 2615 ntTSL 5 BASIC12.27□□□□□ -0.44
Upf3aQ3ULJ3 Wdfy1-204ENSMUST00000113512 4551 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Upf3aQ3ULJ3 Wdfy1-205ENSMUST00000113513 4551 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.44
Upf3aQ3ULJ3 Wdfy1-206ENSMUST00000113514 4551 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Upf3aQ3ULJ3 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Upf3aQ3ULJ3 Gm38089-201ENSMUST00000193585 1514 ntBASIC12.27□□□□□ -0.44
Upf3aQ3ULJ3 Pdlim2-201ENSMUST00000022681 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Upf3aQ3ULJ3 AC130823.1-201ENSMUST00000228929 1549 ntBASIC12.27□□□□□ -0.44
Upf3aQ3ULJ3 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC12.27□□□□□ -0.44
Upf3aQ3ULJ3 Rbm5-201ENSMUST00000035199 3064 ntAPPRIS ALT1 TSL 5 BASIC12.27□□□□□ -0.44
Upf3aQ3ULJ3 Cngb1-202ENSMUST00000119870 6189 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.44
Upf3aQ3ULJ3 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Upf3aQ3ULJ3 H2afv-202ENSMUST00000109737 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Upf3aQ3ULJ3 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Ube2q2-203ENSMUST00000122441 2081 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 0610010K14Rik-206ENSMUST00000108576 576 ntAPPRIS ALT1 TSL 2 BASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Rhox3c-202ENSMUST00000115189 648 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Gm14270-201ENSMUST00000118388 846 ntBASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Gm13422-201ENSMUST00000118834 504 ntBASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Gm12969-201ENSMUST00000120199 1004 ntBASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Gm11960-201ENSMUST00000122068 925 ntBASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Fyn-207ENSMUST00000146287 2135 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Gm25554-201ENSMUST00000158075 113 ntBASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Rhox3a2-204ENSMUST00000184565 823 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Gm9884-201ENSMUST00000194343 1222 ntBASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Gm7596-202ENSMUST00000202171 737 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Olfr1380-201ENSMUST00000204300 938 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Cdipt-204ENSMUST00000206346 806 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Fbrs-207ENSMUST00000206394 2961 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Gm45592-201ENSMUST00000209605 1043 ntBASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Gm39288-201ENSMUST00000210554 446 ntBASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Gm18514-201ENSMUST00000218980 436 ntBASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Lhfpl5-201ENSMUST00000080780 1248 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Rhox3e-201ENSMUST00000081327 648 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Olfr1339-201ENSMUST00000094832 948 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Rhox3a2-201ENSMUST00000096459 828 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Slc9a3-204ENSMUST00000225423 2589 ntAPPRIS ALT2 BASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Sgca-202ENSMUST00000103162 1724 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Cacna1c-201ENSMUST00000075591 7584 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Gm13561-201ENSMUST00000136879 1826 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Tcim-201ENSMUST00000052622 1805 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 AC158636.1-201ENSMUST00000220118 1393 ntBASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Plce1-204ENSMUST00000182481 8357 ntAPPRIS P2 TSL 5 BASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Myo15b-208ENSMUST00000222123 5154 ntTSL 5 BASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Pcdhb22-202ENSMUST00000192409 6609 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Tle6-210ENSMUST00000142948 1961 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 AC159314.1-201ENSMUST00000216917 3485 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Clcc1-202ENSMUST00000106609 2043 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Styk1-202ENSMUST00000121078 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3aQ3ULJ3 Rnf17-202ENSMUST00000223627 2077 ntBASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 Trappc9-204ENSMUST00000170633 4688 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 A530016L24Rik-201ENSMUST00000057465 2636 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 Gfra1-203ENSMUST00000129100 4415 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 Gm43061-201ENSMUST00000198850 2241 ntBASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 E330034L11Rik-201ENSMUST00000200640 1742 ntBASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 Iba57-201ENSMUST00000054523 4021 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 Oscar-203ENSMUST00000148012 1796 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 Anks1b-221ENSMUST00000182786 3042 ntTSL 5 BASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 9330111N05Rik-203ENSMUST00000181508 1848 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 Mast1-201ENSMUST00000109741 4872 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 Crygc-202ENSMUST00000114064 612 ntAPPRIS ALT1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 Gm14275-201ENSMUST00000152112 430 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 2810403D21Rik-208ENSMUST00000153212 1005 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 Gm16553-201ENSMUST00000160490 716 ntTSL 3 BASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 Gm20495-201ENSMUST00000173902 235 ntBASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 Gm21844-201ENSMUST00000178699 663 ntTSL 3 BASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 Gm19015-201ENSMUST00000184002 1189 ntBASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 Dydc1-203ENSMUST00000189865 995 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 Gm8197-202ENSMUST00000193422 934 ntBASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 Gm43695-201ENSMUST00000196545 196 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 Gm17889-201ENSMUST00000198410 598 ntBASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 AC156501.1-201ENSMUST00000228219 270 ntBASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 C130026I21Rik-202ENSMUST00000093506 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 66.7 ms