Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Padi6-201ENSMUST00000038749 2333 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Traf1P39428 Znrf3-203ENSMUST00000172492 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Traf1P39428 Lnx2-201ENSMUST00000016664 4557 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Traf1P39428 Gm45199-201ENSMUST00000207640 1507 ntBASIC13.54□□□□□ -0.24
Traf1P39428 Snx33-201ENSMUST00000050916 4571 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Traf1P39428 Ctnnbl1-201ENSMUST00000029178 2442 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Traf1P39428 5930412G12Rik-201ENSMUST00000091324 2403 ntTSL 5 BASIC13.54□□□□□ -0.24
Traf1P39428 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Traf1P39428 Oxsm-202ENSMUST00000112624 1586 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Traf1P39428 Immt-203ENSMUST00000114151 2518 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Traf1P39428 Pdp1-202ENSMUST00000095144 2506 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Traf1P39428 Mon1b-202ENSMUST00000179926 3470 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Traf1P39428 Hist2h4-201ENSMUST00000171473 1630 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Traf1P39428 Fam53c-201ENSMUST00000049281 4475 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Traf1P39428 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Traf1P39428 Kctd10-202ENSMUST00000102581 3103 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Traf1P39428 Mob1a-201ENSMUST00000038658 4119 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Traf1P39428 Irak2-201ENSMUST00000059286 3196 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Traf1P39428 Gm2916-202ENSMUST00000181779 1702 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
Traf1P39428 9330199G10Rik-202ENSMUST00000221607 1728 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Traf1P39428 Slc6a21-201ENSMUST00000085364 1732 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Traf1P39428 Riox2-206ENSMUST00000160571 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Traf1P39428 Plg-201ENSMUST00000014578 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Traf1P39428 Ctr9-201ENSMUST00000005749 4300 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Traf1P39428 Trav13d-4-201ENSMUST00000103607 264 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Traf1P39428 Gm826-202ENSMUST00000109475 803 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
Traf1P39428 Snx29-202ENSMUST00000115814 1125 ntTSL 5 BASIC13.54□□□□□ -0.24
Traf1P39428 Gm11667-201ENSMUST00000119828 486 ntBASIC13.54□□□□□ -0.24
Traf1P39428 Gm14965-201ENSMUST00000124118 565 ntTSL 2 BASIC13.54□□□□□ -0.24
Traf1P39428 Dnmt3bos-201ENSMUST00000124988 718 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Traf1P39428 AA387200-201ENSMUST00000147463 1177 ntTSL 3 BASIC13.54□□□□□ -0.24
Traf1P39428 Gm24844-201ENSMUST00000158679 127 ntBASIC13.54□□□□□ -0.24
Traf1P39428 Scgb1b19-201ENSMUST00000165813 418 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
Traf1P39428 Gm3150-201ENSMUST00000166418 204 ntBASIC13.54□□□□□ -0.24
Traf1P39428 Gm10807-201ENSMUST00000177134 795 ntBASIC13.54□□□□□ -0.24
Traf1P39428 Scgb1b3-201ENSMUST00000179481 419 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Traf1P39428 1110059E24Rik-208ENSMUST00000179768 962 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
Traf1P39428 Trav13-4-dv7-202ENSMUST00000184905 264 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Traf1P39428 Insig2-214ENSMUST00000186915 674 ntTSL 3 BASIC13.54□□□□□ -0.24
Traf1P39428 Gm29088-201ENSMUST00000189363 581 ntTSL 3 BASIC13.54□□□□□ -0.24
Traf1P39428 Gm38151-201ENSMUST00000195085 289 ntBASIC13.54□□□□□ -0.24
Traf1P39428 Gm43186-201ENSMUST00000198130 824 ntBASIC13.54□□□□□ -0.24
Traf1P39428 Gm44421-201ENSMUST00000205064 1221 ntBASIC13.54□□□□□ -0.24
Traf1P39428 Gm9463-201ENSMUST00000206707 601 ntBASIC13.54□□□□□ -0.24
Traf1P39428 Emp3-203ENSMUST00000210297 601 ntAPPRIS P1 TSL 3 BASIC13.54□□□□□ -0.24
Traf1P39428 2010001M07Rik-201ENSMUST00000214235 364 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Traf1P39428 4930448E22Rik-203ENSMUST00000215349 299 ntTSL 3 BASIC13.54□□□□□ -0.24
Traf1P39428 Gm40576-201ENSMUST00000221773 1152 ntTSL 5 BASIC13.54□□□□□ -0.24
Traf1P39428 Tff2-201ENSMUST00000024826 584 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Traf1P39428 Gm6781-201ENSMUST00000038304 1242 ntBASIC13.54□□□□□ -0.24
Traf1P39428 Olfr354-201ENSMUST00000068475 1084 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Traf1P39428 Rdh16f2-201ENSMUST00000092058 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Traf1P39428 Camta1-201ENSMUST00000049790 8423 ntAPPRIS P2 TSL 5 BASIC13.54□□□□□ -0.24
Traf1P39428 Emilin1-201ENSMUST00000031055 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Traf1P39428 Hk3-202ENSMUST00000123097 2896 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Traf1P39428 Eya1-202ENSMUST00000080664 3426 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Traf1P39428 Rad51ap1-202ENSMUST00000112221 1871 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Traf1P39428 Prr3-203ENSMUST00000172429 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Traf1P39428 Herpud1-201ENSMUST00000034220 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Traf1P39428 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Traf1P39428 Srp54b-202ENSMUST00000218879 3642 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Traf1P39428 Elmod3-204ENSMUST00000141833 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Traf1P39428 4833439L19Rik-208ENSMUST00000153065 2502 ntTSL 5 BASIC13.54□□□□□ -0.24
Traf1P39428 Pcnx-201ENSMUST00000021567 12139 ntAPPRIS P2 TSL 2 BASIC13.54□□□□□ -0.24
Traf1P39428 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Traf1P39428 Ttc29-202ENSMUST00000109902 1416 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
Traf1P39428 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Traf1P39428 Il22ra1-201ENSMUST00000102546 2569 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Traf1P39428 Ly6e-210ENSMUST00000188866 2068 ntAPPRIS P1 TSL 3 BASIC13.54□□□□□ -0.24
Traf1P39428 Mmachc-201ENSMUST00000030453 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Traf1P39428 Efcab14-203ENSMUST00000106524 1544 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Traf1P39428 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Traf1P39428 Taf6-202ENSMUST00000110936 2308 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Traf1P39428 Limch1-204ENSMUST00000118242 5050 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Traf1P39428 Trpm1-221ENSMUST00000206706 2350 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Traf1P39428 Gm9008-201ENSMUST00000097218 2353 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Traf1P39428 Insrr-201ENSMUST00000029711 5102 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Traf1P39428 Vipas39-203ENSMUST00000179379 2418 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Traf1P39428 Ccdc154-203ENSMUST00000182621 2402 ntAPPRIS P2 TSL 5 BASIC13.53□□□□□ -0.24
Traf1P39428 Rps6kb1-202ENSMUST00000058286 3250 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Traf1P39428 Tcf4-252ENSMUST00000202477 1873 ntTSL 5 BASIC13.53□□□□□ -0.24
Traf1P39428 Abca7-201ENSMUST00000043866 6590 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Traf1P39428 Rtn4-202ENSMUST00000078830 3615 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Traf1P39428 Cdc25a-204ENSMUST00000198308 2880 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Traf1P39428 Mak-202ENSMUST00000070193 2937 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Traf1P39428 n-R5s64-201ENSMUST00000102019 119 ntBASIC13.53□□□□□ -0.24
Traf1P39428 Ndufs5-203ENSMUST00000106207 680 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Traf1P39428 Nudt1-205ENSMUST00000110827 744 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Traf1P39428 Rpl19-ps1-201ENSMUST00000121059 591 ntBASIC13.53□□□□□ -0.24
Traf1P39428 Aamdc-203ENSMUST00000124552 618 ntTSL 3 BASIC13.53□□□□□ -0.24
Traf1P39428 Gm13822-201ENSMUST00000127563 346 ntTSL 3 BASIC13.53□□□□□ -0.24
Traf1P39428 Gm16312-201ENSMUST00000156285 362 ntTSL 3 BASIC13.53□□□□□ -0.24
Traf1P39428 Gm20662-201ENSMUST00000176356 601 ntAPPRIS P5 TSL 3 BASIC13.53□□□□□ -0.24
Traf1P39428 Gm4654-201ENSMUST00000183305 982 ntBASIC13.53□□□□□ -0.24
Traf1P39428 Gm29233-201ENSMUST00000190311 281 ntTSL 5 BASIC13.53□□□□□ -0.24
Traf1P39428 Olfr431-ps1-201ENSMUST00000192435 544 ntBASIC13.53□□□□□ -0.24
Traf1P39428 Ighv6-7-201ENSMUST00000193397 357 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Traf1P39428 D9Wsu149-201ENSMUST00000214169 594 ntBASIC13.53□□□□□ -0.24
Traf1P39428 Ndufs5-201ENSMUST00000030401 525 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Traf1P39428 Egr2-201ENSMUST00000048289 2965 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms