Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Col18a1P39061 B230317F23Rik-201ENSMUST00000052189 2472 ntBASIC15.08■□□□□ 0.01
Col18a1P39061 Bcl2l15-202ENSMUST00000106822 1902 ntTSL 1 (best) BASIC15.08■□□□□ 0
Col18a1P39061 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Col18a1P39061 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC15.08■□□□□ 0
Col18a1P39061 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col18a1P39061 Cdc42-202ENSMUST00000051477 2108 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
Col18a1P39061 Qrsl1-201ENSMUST00000020012 1981 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col18a1P39061 Gm45897-201ENSMUST00000212679 1998 ntTSL 5 BASIC15.08■□□□□ 0
Col18a1P39061 Ssr1-203ENSMUST00000225246 1825 ntBASIC15.08■□□□□ 0
Col18a1P39061 Gm12716-201ENSMUST00000120606 1354 ntBASIC15.08■□□□□ 0
Col18a1P39061 Akr1c6-201ENSMUST00000021630 1396 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col18a1P39061 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col18a1P39061 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Col18a1P39061 4930593A02Rik-201ENSMUST00000181694 1437 ntTSL 5 BASIC15.08■□□□□ 0
Col18a1P39061 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col18a1P39061 Rai2-201ENSMUST00000061514 2204 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col18a1P39061 Pxmp4-202ENSMUST00000109703 560 ntTSL 1 (best) BASIC15.08■□□□□ 0
Col18a1P39061 Gm12916-201ENSMUST00000139012 948 ntTSL 1 (best) BASIC15.08■□□□□ 0
Col18a1P39061 Gm12847-201ENSMUST00000156219 413 ntTSL 5 BASIC15.08■□□□□ 0
Col18a1P39061 Olfr527-201ENSMUST00000172230 978 ntAPPRIS P1 BASIC15.08■□□□□ 0
Col18a1P39061 Gm43349-201ENSMUST00000200047 503 ntTSL 2 BASIC15.08■□□□□ 0
Col18a1P39061 Gm45484-201ENSMUST00000210310 1141 ntBASIC15.08■□□□□ 0
Col18a1P39061 Gm31786-201ENSMUST00000212305 564 ntTSL 1 (best) BASIC15.08■□□□□ 0
Col18a1P39061 AC154433.1-201ENSMUST00000224401 1183 ntBASIC15.08■□□□□ 0
Col18a1P39061 Ascl3-201ENSMUST00000035372 700 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col18a1P39061 Gm5148-201ENSMUST00000079755 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col18a1P39061 Gm29101-201ENSMUST00000188329 1471 ntBASIC15.08■□□□□ 0
Col18a1P39061 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Col18a1P39061 B430212C06Rik-205ENSMUST00000145081 2623 ntTSL 1 (best) BASIC15.07■□□□□ 0
Col18a1P39061 Lims1-201ENSMUST00000020077 1565 ntTSL 1 (best) BASIC15.07■□□□□ 0
Col18a1P39061 Mrc2-201ENSMUST00000021038 3335 ntTSL 1 (best) BASIC15.07■□□□□ 0
Col18a1P39061 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
Col18a1P39061 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col18a1P39061 Gm29245-201ENSMUST00000187332 1416 ntBASIC15.07■□□□□ 0
Col18a1P39061 Tcte1-201ENSMUST00000113547 3074 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Col18a1P39061 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Col18a1P39061 Paip2-202ENSMUST00000115734 815 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Col18a1P39061 Rps18-ps1-201ENSMUST00000120838 459 ntBASIC15.07■□□□□ 0
Col18a1P39061 4930529I22Rik-201ENSMUST00000131509 589 ntTSL 1 (best) BASIC15.07■□□□□ 0
Col18a1P39061 Gm3115-202ENSMUST00000177660 618 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Col18a1P39061 Gm6337-203ENSMUST00000177662 618 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Col18a1P39061 Gm3727-202ENSMUST00000178251 618 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Col18a1P39061 Gm6686-201ENSMUST00000178455 258 ntBASIC15.07■□□□□ 0
Col18a1P39061 Gm33570-201ENSMUST00000207608 1254 ntTSL 5 BASIC15.07■□□□□ 0
Col18a1P39061 Olfr209-202ENSMUST00000208246 428 ntTSL 1 (best) BASIC15.07■□□□□ 0
Col18a1P39061 Gm40689-201ENSMUST00000218006 362 ntTSL 5 BASIC15.07■□□□□ 0
Col18a1P39061 AC141884.2-201ENSMUST00000228811 775 ntBASIC15.07■□□□□ 0
Col18a1P39061 Gm10701-201ENSMUST00000098926 906 ntTSL 2 BASIC15.07■□□□□ 0
Col18a1P39061 Cr1l-201ENSMUST00000075451 1651 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Col18a1P39061 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Col18a1P39061 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col18a1P39061 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Col18a1P39061 Sgms1-212ENSMUST00000151289 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col18a1P39061 Slc25a25-201ENSMUST00000028160 3294 ntTSL 1 (best) BASIC15.07■□□□□ 0
Col18a1P39061 Pak6-202ENSMUST00000110853 3677 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col18a1P39061 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Col18a1P39061 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col18a1P39061 Gm19027-201ENSMUST00000187291 1355 ntBASIC15.07■□□□□ 0
Col18a1P39061 H2-M2-201ENSMUST00000016427 1550 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Col18a1P39061 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Col18a1P39061 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Col18a1P39061 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
Col18a1P39061 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col18a1P39061 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col18a1P39061 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col18a1P39061 2610028H24Rik-202ENSMUST00000105415 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Col18a1P39061 Mcemp1-201ENSMUST00000014118 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col18a1P39061 Gm15476-201ENSMUST00000118247 1191 ntBASIC15.06■□□□□ 0
Col18a1P39061 Gm13688-201ENSMUST00000121557 608 ntBASIC15.06■□□□□ 0
Col18a1P39061 Gm11521-201ENSMUST00000143302 329 ntTSL 3 BASIC15.06■□□□□ 0
Col18a1P39061 C330019F10Rik-201ENSMUST00000149428 459 ntTSL 1 (best) BASIC15.06■□□□□ 0
Col18a1P39061 2410124H12Rik-201ENSMUST00000160494 706 ntTSL 1 (best) BASIC15.06■□□□□ 0
Col18a1P39061 2700099C18Rik-203ENSMUST00000182475 969 ntTSL 1 (best) BASIC15.06■□□□□ 0
Col18a1P39061 Rassf6-205ENSMUST00000202704 1178 ntAPPRIS P3 TSL 5 BASIC15.06■□□□□ 0
Col18a1P39061 Gm8796-201ENSMUST00000219122 936 ntBASIC15.06■□□□□ 0
Col18a1P39061 Tdpoz4-201ENSMUST00000075953 1113 ntAPPRIS P1 BASIC15.06■□□□□ 0
Col18a1P39061 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC15.06■□□□□ 0
Col18a1P39061 Camkv-204ENSMUST00000194206 2827 ntTSL 5 BASIC15.06■□□□□ 0
Col18a1P39061 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col18a1P39061 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col18a1P39061 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col18a1P39061 Gm29295-201ENSMUST00000190004 1371 ntTSL 5 BASIC15.06■□□□□ 0
Col18a1P39061 Nxpe5-201ENSMUST00000110929 2312 ntAPPRIS P2 TSL 5 BASIC15.06■□□□□ 0
Col18a1P39061 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col18a1P39061 D17H6S53E-201ENSMUST00000061859 2142 ntAPPRIS P1 TSL 3 BASIC15.06■□□□□ 0
Col18a1P39061 Zc2hc1a-203ENSMUST00000193010 1420 ntTSL 1 (best) BASIC15.06■□□□□ 0
Col18a1P39061 C130026I21Rik-202ENSMUST00000093506 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Col18a1P39061 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col18a1P39061 Cfb-202ENSMUST00000128767 2751 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Col18a1P39061 Gm14650-201ENSMUST00000120400 889 ntBASIC15.06■□□□□ 0
Col18a1P39061 2010204K13Rik-203ENSMUST00000150671 885 ntTSL 1 (best) BASIC15.06■□□□□ 0
Col18a1P39061 Gm13842-202ENSMUST00000156331 865 ntTSL 1 (best) BASIC15.06■□□□□ 0
Col18a1P39061 Gm22994-201ENSMUST00000175422 82 ntBASIC15.06■□□□□ 0
Col18a1P39061 Sbsn-205ENSMUST00000182721 677 ntAPPRIS ALT2 TSL 3 BASIC15.06■□□□□ 0
Col18a1P39061 Gm28826-201ENSMUST00000190006 488 ntTSL 2 BASIC15.06■□□□□ 0
Col18a1P39061 Med11-201ENSMUST00000019067 902 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col18a1P39061 Gm42133-201ENSMUST00000196076 637 ntTSL 3 BASIC15.06■□□□□ 0
Col18a1P39061 Prmt1-214ENSMUST00000209124 741 ntTSL 5 BASIC15.06■□□□□ 0
Col18a1P39061 Gm8162-201ENSMUST00000213951 665 ntBASIC15.06■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms