Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Tnnt1-213ENSMUST00000178163 934 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
Lire1P11260 Gm27046-201ENSMUST00000182160 463 ntBASIC11.19□□□□□ -0.62
Lire1P11260 1700012D14Rik-202ENSMUST00000209959 629 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Lire1P11260 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC11.19□□□□□ -0.62
Lire1P11260 CT009486.1-201ENSMUST00000222047 661 ntTSL 3 BASIC11.19□□□□□ -0.62
Lire1P11260 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lire1P11260 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lire1P11260 Lrmda-201ENSMUST00000075639 908 ntAPPRIS P2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lire1P11260 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC11.19□□□□□ -0.62
Lire1P11260 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lire1P11260 Gng7-203ENSMUST00000117805 3382 ntAPPRIS ALT1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lire1P11260 Rgs17-203ENSMUST00000117676 1651 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lire1P11260 Sema3g-201ENSMUST00000090180 4540 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lire1P11260 Knop1-206ENSMUST00000126792 3253 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lire1P11260 Rims1-206ENSMUST00000115273 6107 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
Lire1P11260 Gm43457-201ENSMUST00000200867 2409 ntBASIC11.19□□□□□ -0.62
Lire1P11260 Mtss1l-205ENSMUST00000144041 3225 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Lire1P11260 Sord-201ENSMUST00000110551 2352 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lire1P11260 Cln3-201ENSMUST00000032962 2386 ntAPPRIS P2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lire1P11260 Tm9sf2-201ENSMUST00000026624 3107 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lire1P11260 Dsc2-201ENSMUST00000039247 4630 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lire1P11260 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lire1P11260 Arc-202ENSMUST00000110009 3054 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lire1P11260 Arc-201ENSMUST00000023268 3055 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lire1P11260 Cd6-203ENSMUST00000080292 3032 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lire1P11260 Nrg1-206ENSMUST00000208205 2645 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
Lire1P11260 Txndc2-201ENSMUST00000050236 1899 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lire1P11260 Nin-201ENSMUST00000021468 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lire1P11260 Arhgap24-203ENSMUST00000094559 3346 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lire1P11260 Gm19221-201ENSMUST00000221827 1477 ntBASIC11.19□□□□□ -0.62
Lire1P11260 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
Lire1P11260 Dcaf17-209ENSMUST00000154704 7739 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lire1P11260 Ehd2-201ENSMUST00000098799 5119 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lire1P11260 Crispld2-202ENSMUST00000108972 2928 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lire1P11260 Olfr56-204ENSMUST00000203149 1808 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lire1P11260 Cry2-201ENSMUST00000090559 3976 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Lire1P11260 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Lire1P11260 Oasl1-201ENSMUST00000031540 2125 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Lire1P11260 Eps8l2-201ENSMUST00000026577 3191 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Lire1P11260 Cldn19-202ENSMUST00000094823 4168 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Lire1P11260 Tex9-209ENSMUST00000184125 2794 ntAPPRIS P2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Lire1P11260 Gm16168-201ENSMUST00000161091 1359 ntTSL 3 BASIC11.18□□□□□ -0.62
Lire1P11260 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
Lire1P11260 Ttll7-205ENSMUST00000170055 6075 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.62
Lire1P11260 Gm5053-201ENSMUST00000208361 1678 ntBASIC11.18□□□□□ -0.62
Lire1P11260 Hsd3b1-201ENSMUST00000029465 1663 ntAPPRIS P1 TSL 2 BASIC11.18□□□□□ -0.62
Lire1P11260 9030407P20Rik-201ENSMUST00000180933 2310 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Lire1P11260 Gm37737-201ENSMUST00000195013 1638 ntBASIC11.18□□□□□ -0.62
Lire1P11260 Sufu-201ENSMUST00000039922 4522 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
Lire1P11260 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Lire1P11260 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Lire1P11260 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Lire1P11260 Gm12566-201ENSMUST00000121479 359 ntBASIC11.18□□□□□ -0.62
Lire1P11260 Olfr647-ps1-201ENSMUST00000121599 960 ntBASIC11.18□□□□□ -0.62
Lire1P11260 Nbdy-201ENSMUST00000140575 788 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Lire1P11260 Gm13570-201ENSMUST00000140763 309 ntBASIC11.18□□□□□ -0.62
Lire1P11260 Nbdy-202ENSMUST00000149514 775 ntAPPRIS ALT2 TSL 2 BASIC11.18□□□□□ -0.62
Lire1P11260 Rps13-201ENSMUST00000170953 589 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Lire1P11260 Gm13381-202ENSMUST00000177012 640 ntTSL 5 BASIC11.18□□□□□ -0.62
Lire1P11260 Dleu2-205ENSMUST00000182325 463 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Lire1P11260 Dleu2-212ENSMUST00000183079 535 ntTSL 3 BASIC11.18□□□□□ -0.62
Lire1P11260 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC11.18□□□□□ -0.62
Lire1P11260 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Lire1P11260 1700020N18Rik-201ENSMUST00000188956 547 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Lire1P11260 Gm19605-202ENSMUST00000221514 1084 ntTSL 5 BASIC11.18□□□□□ -0.62
Lire1P11260 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC11.18□□□□□ -0.62
Lire1P11260 AC161537.1-201ENSMUST00000226199 1015 ntBASIC11.18□□□□□ -0.62
Lire1P11260 H2-Oa-201ENSMUST00000025192 1088 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Lire1P11260 Nmnat1-201ENSMUST00000030845 1238 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Lire1P11260 Itln1-201ENSMUST00000043094 1141 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Lire1P11260 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Lire1P11260 Olfr311-201ENSMUST00000071625 927 ntAPPRIS P1 BASIC11.18□□□□□ -0.62
Lire1P11260 Pla2g2f-201ENSMUST00000030526 2465 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Lire1P11260 Lnx1-203ENSMUST00000113531 3098 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Lire1P11260 Gm15674-201ENSMUST00000143266 2438 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Lire1P11260 Cd19-201ENSMUST00000032968 2432 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Lire1P11260 Gal3st2b-202ENSMUST00000178757 2722 ntAPPRIS P2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Lire1P11260 Tesk2-201ENSMUST00000045542 3033 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Lire1P11260 Aspm-201ENSMUST00000053364 9867 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Lire1P11260 Dmac2-201ENSMUST00000077338 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Lire1P11260 Kdm4a-204ENSMUST00000106406 4663 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Lire1P11260 Ift88os-201ENSMUST00000149702 2016 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Lire1P11260 Tle1-201ENSMUST00000030095 2569 ntTSL 5 BASIC11.18□□□□□ -0.62
Lire1P11260 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
Lire1P11260 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC11.17□□□□□ -0.62
Lire1P11260 6820426E19Rik-201ENSMUST00000204274 1970 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Lire1P11260 Ep400-202ENSMUST00000112433 3399 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Lire1P11260 Gabarapl2-201ENSMUST00000034428 1677 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Lire1P11260 Brd3-210ENSMUST00000164296 2791 ntAPPRIS P3 TSL 5 BASIC11.17□□□□□ -0.62
Lire1P11260 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Lire1P11260 Sell-201ENSMUST00000027871 2199 ntAPPRIS P2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Lire1P11260 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Lire1P11260 Hdac6-202ENSMUST00000115642 4069 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Lire1P11260 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Lire1P11260 Gm26868-201ENSMUST00000181927 2655 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Lire1P11260 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC11.17□□□□□ -0.62
Lire1P11260 Xrra1-202ENSMUST00000207855 1334 ntAPPRIS ALT2 TSL 5 BASIC11.17□□□□□ -0.62
Lire1P11260 Zfp235-201ENSMUST00000056549 3373 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Lire1P11260 Madd-213ENSMUST00000111376 5927 ntAPPRIS ALT2 TSL 5 BASIC11.17□□□□□ -0.62
Lire1P11260 Rbm47-205ENSMUST00000167950 4895 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 41.2 ms