Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Col1a1P11087 AC159314.1-201ENSMUST00000216917 3485 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Col1a1P11087 Slc29a1-213ENSMUST00000167692 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Col1a1P11087 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Col1a1P11087 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Col1a1P11087 Dync1i1-202ENSMUST00000115555 2669 ntAPPRIS ALT1 TSL 5 BASIC13.52□□□□□ -0.24
Col1a1P11087 Fbp2-201ENSMUST00000021907 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Col1a1P11087 Pfkfb2-208ENSMUST00000187089 1690 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
Col1a1P11087 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Col1a1P11087 D17H6S53E-201ENSMUST00000061859 2142 ntAPPRIS P1 TSL 3 BASIC13.52□□□□□ -0.24
Col1a1P11087 Alox12b-201ENSMUST00000036424 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Col1a1P11087 Psmd9-201ENSMUST00000100729 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col1a1P11087 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col1a1P11087 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Col1a1P11087 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col1a1P11087 Trav12-3-201ENSMUST00000103657 442 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
Col1a1P11087 Gm14052-201ENSMUST00000121434 1031 ntBASIC13.52□□□□□ -0.25
Col1a1P11087 Rpsa-ps5-201ENSMUST00000121462 885 ntBASIC13.52□□□□□ -0.25
Col1a1P11087 Gm16217-201ENSMUST00000124182 616 ntTSL 3 BASIC13.52□□□□□ -0.25
Col1a1P11087 Tspan32os-201ENSMUST00000131740 975 ntTSL 2 BASIC13.52□□□□□ -0.25
Col1a1P11087 Dnmt3l-203ENSMUST00000131825 1113 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Col1a1P11087 Dnmt3l-206ENSMUST00000139539 1279 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Col1a1P11087 1700057H21Rik-202ENSMUST00000154530 506 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Col1a1P11087 Gm25569-201ENSMUST00000157175 131 ntBASIC13.52□□□□□ -0.25
Col1a1P11087 Tubb1-201ENSMUST00000016399 1406 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col1a1P11087 Krtcap2-204ENSMUST00000168900 582 ntTSL 3 BASIC13.52□□□□□ -0.25
Col1a1P11087 Gm13290-201ENSMUST00000177806 968 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
Col1a1P11087 Gm5342-201ENSMUST00000181982 1003 ntBASIC13.52□□□□□ -0.25
Col1a1P11087 Ly6e-207ENSMUST00000187606 735 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
Col1a1P11087 Gm37197-201ENSMUST00000195607 401 ntBASIC13.52□□□□□ -0.25
Col1a1P11087 Nme6-214ENSMUST00000200468 865 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
Col1a1P11087 BC049987-201ENSMUST00000213859 918 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Col1a1P11087 AC154589.2-201ENSMUST00000228847 251 ntBASIC13.52□□□□□ -0.25
Col1a1P11087 Atp5j2-201ENSMUST00000037056 540 ntTSL 5 BASIC13.52□□□□□ -0.25
Col1a1P11087 Catsperz-201ENSMUST00000057716 781 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col1a1P11087 Fpr-rs3-201ENSMUST00000071189 1032 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
Col1a1P11087 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col1a1P11087 Map4k2-201ENSMUST00000025897 4644 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col1a1P11087 Eya1-202ENSMUST00000080664 3426 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Col1a1P11087 Trim46-201ENSMUST00000041022 3122 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col1a1P11087 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC13.52□□□□□ -0.25
Col1a1P11087 Gm20554-201ENSMUST00000177421 2352 ntBASIC13.52□□□□□ -0.25
Col1a1P11087 Alox5-207ENSMUST00000170186 1929 ntTSL 5 BASIC13.52□□□□□ -0.25
Col1a1P11087 Gimap5-201ENSMUST00000055558 1953 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col1a1P11087 Adamts15-201ENSMUST00000065112 5928 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col1a1P11087 Sparcl1-201ENSMUST00000031249 2759 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col1a1P11087 B4galt4-201ENSMUST00000023482 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col1a1P11087 Pex3-207ENSMUST00000170376 1381 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Col1a1P11087 Nrd1-201ENSMUST00000065977 4311 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col1a1P11087 Rgs12-201ENSMUST00000030984 5472 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col1a1P11087 Gadl1-202ENSMUST00000119291 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col1a1P11087 Psd-210ENSMUST00000225323 3398 ntAPPRIS ALT2 BASIC13.51□□□□□ -0.25
Col1a1P11087 Cbfa2t2-202ENSMUST00000099178 3247 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Col1a1P11087 Acnat2-202ENSMUST00000107698 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col1a1P11087 Ephb6-201ENSMUST00000114732 3762 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col1a1P11087 Gm38100-202ENSMUST00000201297 1789 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col1a1P11087 S100a3-201ENSMUST00000001047 712 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col1a1P11087 Snord23-201ENSMUST00000116828 109 ntBASIC13.51□□□□□ -0.25
Col1a1P11087 Gm15625-201ENSMUST00000117617 1093 ntBASIC13.51□□□□□ -0.25
Col1a1P11087 Gm6630-201ENSMUST00000119199 454 ntBASIC13.51□□□□□ -0.25
Col1a1P11087 Gm9166-201ENSMUST00000120293 561 ntBASIC13.51□□□□□ -0.25
Col1a1P11087 Gng5-ps-201ENSMUST00000120931 205 ntBASIC13.51□□□□□ -0.25
Col1a1P11087 Mrpl24-204ENSMUST00000121920 1115 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col1a1P11087 Gm24954-201ENSMUST00000178831 110 ntBASIC13.51□□□□□ -0.25
Col1a1P11087 Gm43249-201ENSMUST00000200464 458 ntBASIC13.51□□□□□ -0.25
Col1a1P11087 Psca-201ENSMUST00000023265 860 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col1a1P11087 Olfr525-201ENSMUST00000078103 1050 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
Col1a1P11087 P2rx7-202ENSMUST00000086247 712 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Col1a1P11087 Ivns1abp-202ENSMUST00000097543 3337 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Col1a1P11087 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Col1a1P11087 Gm29684-201ENSMUST00000220248 1982 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Col1a1P11087 AC125108.1-201ENSMUST00000218986 2330 ntBASIC13.51□□□□□ -0.25
Col1a1P11087 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Col1a1P11087 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col1a1P11087 Mpv17-202ENSMUST00000200744 1653 ntTSL 2 BASIC13.51□□□□□ -0.25
Col1a1P11087 Gm5740-201ENSMUST00000211003 1857 ntBASIC13.51□□□□□ -0.25
Col1a1P11087 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col1a1P11087 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col1a1P11087 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col1a1P11087 Hyal3-202ENSMUST00000148440 1380 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Col1a1P11087 Gm38344-201ENSMUST00000195306 1353 ntBASIC13.51□□□□□ -0.25
Col1a1P11087 Thoc5-202ENSMUST00000101615 2116 ntTSL 5 BASIC13.51□□□□□ -0.25
Col1a1P11087 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col1a1P11087 Oprm1-208ENSMUST00000092734 1569 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col1a1P11087 Gm5171-201ENSMUST00000214944 1415 ntBASIC13.5□□□□□ -0.25
Col1a1P11087 2610001J05Rik-203ENSMUST00000185219 1606 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
Col1a1P11087 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
Col1a1P11087 Rgs11-201ENSMUST00000025020 2006 ntAPPRIS P2 TSL 2 BASIC13.5□□□□□ -0.25
Col1a1P11087 Ces1d-201ENSMUST00000034172 2004 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col1a1P11087 Aknad1-202ENSMUST00000133931 2603 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col1a1P11087 Unc119-202ENSMUST00000100755 933 ntTSL 2 BASIC13.5□□□□□ -0.25
Col1a1P11087 Ube2d-ps-201ENSMUST00000121354 441 ntBASIC13.5□□□□□ -0.25
Col1a1P11087 B230307C23Rik-202ENSMUST00000122450 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col1a1P11087 Gm23675-201ENSMUST00000157311 125 ntBASIC13.5□□□□□ -0.25
Col1a1P11087 Cdhr4-208ENSMUST00000176373 492 ntTSL 5 BASIC13.5□□□□□ -0.25
Col1a1P11087 4930578M01Rik-201ENSMUST00000180490 907 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Col1a1P11087 Abhd14a-204ENSMUST00000185334 1109 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Col1a1P11087 1700001J11Rik-201ENSMUST00000185917 759 ntBASIC13.5□□□□□ -0.25
Col1a1P11087 Gm37452-201ENSMUST00000194416 1160 ntBASIC13.5□□□□□ -0.25
Col1a1P11087 Gm43547-201ENSMUST00000197729 328 ntBASIC13.5□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 46.9 ms