Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gm42710-201ENSMUST00000200608 985 ntBASIC9.35□□□□□ -0.91
Hoxd3P09027 Gm7961-201ENSMUST00000201338 1436 ntBASIC9.35□□□□□ -0.91
Hoxd3P09027 4930448A20Rik-201ENSMUST00000205988 1034 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Hoxd3P09027 Gm45554-202ENSMUST00000210964 1090 ntTSL 5 BASIC9.35□□□□□ -0.91
Hoxd3P09027 Gm43154-214ENSMUST00000211225 1420 ntTSL 5 BASIC9.35□□□□□ -0.91
Hoxd3P09027 Fam198a-203ENSMUST00000214536 2789 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Hoxd3P09027 Rpl17-ps3-201ENSMUST00000221295 556 ntBASIC9.35□□□□□ -0.91
Hoxd3P09027 AC163038.1-201ENSMUST00000223632 1142 ntBASIC9.35□□□□□ -0.91
Hoxd3P09027 Dapl1-201ENSMUST00000028369 573 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hoxd3P09027 Pdcl2-201ENSMUST00000031145 1181 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hoxd3P09027 Mfsd13b-201ENSMUST00000033166 1883 ntAPPRIS P2 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hoxd3P09027 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hoxd3P09027 Wdr59-201ENSMUST00000034437 4896 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Hoxd3P09027 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hoxd3P09027 Ajuba-201ENSMUST00000054487 3397 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hoxd3P09027 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC9.35□□□□□ -0.91
Hoxd3P09027 Olfr1428-201ENSMUST00000087824 945 ntAPPRIS P1 BASIC9.35□□□□□ -0.91
Hoxd3P09027 Plekha5-201ENSMUST00000087622 7382 ntAPPRIS P1 TSL 5 BASIC9.35□□□□□ -0.91
Hoxd3P09027 Grik3-201ENSMUST00000030676 8973 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hoxd3P09027 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hoxd3P09027 CT025624.1-201ENSMUST00000224007 2700 ntBASIC9.35□□□□□ -0.91
Hoxd3P09027 Il21r-202ENSMUST00000206103 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hoxd3P09027 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC9.35□□□□□ -0.91
Hoxd3P09027 Tmem215-201ENSMUST00000049655 4733 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hoxd3P09027 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC9.35□□□□□ -0.91
Hoxd3P09027 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hoxd3P09027 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hoxd3P09027 Cyp4f16-208ENSMUST00000169591 2242 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hoxd3P09027 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hoxd3P09027 E2f3-201ENSMUST00000102948 5097 ntAPPRIS P2 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hoxd3P09027 Ambra1-204ENSMUST00000111316 5063 ntTSL 5 BASIC9.35□□□□□ -0.91
Hoxd3P09027 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hoxd3P09027 Polrmt-201ENSMUST00000020580 3755 ntAPPRIS P2 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hoxd3P09027 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Hoxd3P09027 1700030J22Rik-202ENSMUST00000213068 1482 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hoxd3P09027 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Hoxd3P09027 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hoxd3P09027 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Hoxd3P09027 Gsdma2-201ENSMUST00000017355 1314 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Hoxd3P09027 Milr1-201ENSMUST00000086353 1348 ntAPPRIS P3 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hoxd3P09027 Sufu-204ENSMUST00000120778 1850 ntTSL 2 BASIC9.34□□□□□ -0.91
Hoxd3P09027 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Hoxd3P09027 Cacna1c-212ENSMUST00000187940 7507 ntAPPRIS ALT2 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hoxd3P09027 Trip13-201ENSMUST00000022053 3399 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hoxd3P09027 Ercc8-201ENSMUST00000054835 2111 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hoxd3P09027 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Hoxd3P09027 Fhdc1-202ENSMUST00000107689 5918 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hoxd3P09027 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC9.34□□□□□ -0.91
Hoxd3P09027 1700016H13Rik-202ENSMUST00000119824 1447 ntAPPRIS P1 TSL 5 BASIC9.34□□□□□ -0.91
Hoxd3P09027 Pla2g1b-202ENSMUST00000112071 361 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Hoxd3P09027 Gm14957-201ENSMUST00000121069 817 ntBASIC9.34□□□□□ -0.91
Hoxd3P09027 Ankrd29-202ENSMUST00000122408 850 ntTSL 5 BASIC9.34□□□□□ -0.91
Hoxd3P09027 Pabpc1l2a-ps-201ENSMUST00000128361 513 ntBASIC9.34□□□□□ -0.91
Hoxd3P09027 Gm15245-201ENSMUST00000129410 1186 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Hoxd3P09027 Gm13966-201ENSMUST00000148420 832 ntTSL 3 BASIC9.34□□□□□ -0.91
Hoxd3P09027 Gm11655-201ENSMUST00000153899 765 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Hoxd3P09027 Gm13115-201ENSMUST00000156438 620 ntTSL 5 BASIC9.34□□□□□ -0.91
Hoxd3P09027 Gm5795-202ENSMUST00000166275 612 ntTSL 5 BASIC9.34□□□□□ -0.91
Hoxd3P09027 Gm8279-203ENSMUST00000170040 612 ntTSL 5 BASIC9.34□□□□□ -0.91
Hoxd3P09027 Gm18734-201ENSMUST00000172937 808 ntBASIC9.34□□□□□ -0.91
Hoxd3P09027 Gm10413-202ENSMUST00000177913 612 ntAPPRIS ALT2 TSL 2 BASIC9.34□□□□□ -0.91
Hoxd3P09027 Gm3047-202ENSMUST00000177998 618 ntAPPRIS ALT2 TSL 5 BASIC9.34□□□□□ -0.91
Hoxd3P09027 Gm8297-203ENSMUST00000178389 618 ntAPPRIS ALT2 TSL 5 BASIC9.34□□□□□ -0.91
Hoxd3P09027 Gm3424-202ENSMUST00000178418 618 ntAPPRIS ALT2 TSL 5 BASIC9.34□□□□□ -0.91
Hoxd3P09027 Gm3187-201ENSMUST00000178429 618 ntAPPRIS ALT2 TSL 5 BASIC9.34□□□□□ -0.91
Hoxd3P09027 Gm10338-202ENSMUST00000178623 612 ntTSL 5 BASIC9.34□□□□□ -0.91
Hoxd3P09027 Gm3460-202ENSMUST00000178927 618 ntAPPRIS ALT2 TSL 5 BASIC9.34□□□□□ -0.91
Hoxd3P09027 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC9.34□□□□□ -0.91
Hoxd3P09027 Gm21103-203ENSMUST00000179042 618 ntAPPRIS ALT2 TSL 5 BASIC9.34□□□□□ -0.91
Hoxd3P09027 Gm8159-203ENSMUST00000179231 618 ntAPPRIS ALT2 TSL 5 BASIC9.34□□□□□ -0.91
Hoxd3P09027 Gm3029-202ENSMUST00000179327 618 ntAPPRIS ALT2 TSL 5 BASIC9.34□□□□□ -0.91
Hoxd3P09027 Gm8246-201ENSMUST00000179411 618 ntAPPRIS ALT2 TSL 5 BASIC9.34□□□□□ -0.91
Hoxd3P09027 Gm3012-202ENSMUST00000179486 612 ntAPPRIS ALT2 TSL 2 BASIC9.34□□□□□ -0.91
Hoxd3P09027 Tceanc-203ENSMUST00000180322 1080 ntAPPRIS P1 BASIC9.34□□□□□ -0.91
Hoxd3P09027 Gm37678-201ENSMUST00000192908 1146 ntBASIC9.34□□□□□ -0.91
Hoxd3P09027 Gm43378-201ENSMUST00000199336 582 ntBASIC9.34□□□□□ -0.91
Hoxd3P09027 AU022133-201ENSMUST00000200601 873 ntBASIC9.34□□□□□ -0.91
Hoxd3P09027 Gm43596-201ENSMUST00000202818 884 ntBASIC9.34□□□□□ -0.91
Hoxd3P09027 C530044C16Rik-202ENSMUST00000205217 1239 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Hoxd3P09027 AC160052.1-201ENSMUST00000213173 1248 ntTSL 5 BASIC9.34□□□□□ -0.91
Hoxd3P09027 AC069561.1-201ENSMUST00000213750 424 ntBASIC9.34□□□□□ -0.91
Hoxd3P09027 Gm39307-201ENSMUST00000216780 1037 ntTSL 5 BASIC9.34□□□□□ -0.91
Hoxd3P09027 Olfr1347-205ENSMUST00000220413 964 ntBASIC9.34□□□□□ -0.91
Hoxd3P09027 Stfa2-201ENSMUST00000023619 423 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hoxd3P09027 Olfr1347-201ENSMUST00000036357 964 ntAPPRIS P1 BASIC9.34□□□□□ -0.91
Hoxd3P09027 Gm17415-201ENSMUST00000096427 789 ntBASIC9.34□□□□□ -0.91
Hoxd3P09027 Stk10-201ENSMUST00000102821 5026 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hoxd3P09027 Cers6-201ENSMUST00000028426 7038 ntAPPRIS P3 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hoxd3P09027 Steap3-204ENSMUST00000112643 2873 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Hoxd3P09027 Pnpla6-202ENSMUST00000111070 4496 ntAPPRIS P1 TSL 5 BASIC9.34□□□□□ -0.91
Hoxd3P09027 Lnx1-206ENSMUST00000121690 2302 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Hoxd3P09027 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Hoxd3P09027 Tex45-203ENSMUST00000161680 1526 ntAPPRIS P1 TSL 5 BASIC9.34□□□□□ -0.91
Hoxd3P09027 Gm9951-202ENSMUST00000149618 1772 ntTSL 2 BASIC9.34□□□□□ -0.91
Hoxd3P09027 Acp5-203ENSMUST00000165735 1376 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hoxd3P09027 6030443J06Rik-202ENSMUST00000181374 1353 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Hoxd3P09027 Gm42736-201ENSMUST00000200723 1353 ntBASIC9.34□□□□□ -0.91
Hoxd3P09027 Ddx17-201ENSMUST00000054014 4761 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hoxd3P09027 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Hoxd3P09027 Carmil1-201ENSMUST00000072889 4988 ntAPPRIS P3 TSL 1 (best) BASIC9.34□□□□□ -0.91
Retrieved 100 of 76,532 protein–RNA pairs in 42.2 ms