Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Nfe2l1-210ENSMUST00000167110 3547 ntAPPRIS ALT2 TSL 2 BASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Mtr-201ENSMUST00000099856 8294 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim54Q9ERP3 5830417I10Rik-201ENSMUST00000135913 6190 ntBASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Dnmbp-201ENSMUST00000026209 4882 ntAPPRIS P2 TSL 2 BASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Apc2-201ENSMUST00000020349 9074 ntAPPRIS P2 TSL 5 BASIC12.69□□□□□ -0.38
Trim54Q9ERP3 Pcif1-201ENSMUST00000041643 5772 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Rbm5-201ENSMUST00000035199 3064 ntAPPRIS ALT1 TSL 5 BASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Gm43051-201ENSMUST00000201096 2678 ntBASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Mgat1-203ENSMUST00000109194 2480 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Stim1-202ENSMUST00000209255 4362 ntTSL 5 BASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Gm36970-201ENSMUST00000193688 1859 ntBASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Tmem178b-201ENSMUST00000061740 3178 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Tanc2-202ENSMUST00000100330 11855 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Akr1b10-202ENSMUST00000115051 1022 ntTSL 5 BASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Mir1901-201ENSMUST00000122616 78 ntBASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Gm13091-201ENSMUST00000128800 469 ntTSL 5 BASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Gm11211-201ENSMUST00000143618 359 ntTSL 3 BASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Mir1956-201ENSMUST00000157748 65 ntBASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Gm15523-201ENSMUST00000160463 439 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Gm8459-201ENSMUST00000162504 760 ntBASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Rsph14-206ENSMUST00000166088 1203 ntAPPRIS P4 TSL 5 BASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Agtpbp1-216ENSMUST00000168821 721 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Agtpbp1-219ENSMUST00000170378 653 ntTSL 3 BASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Rsph14-207ENSMUST00000179546 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Mir6998-201ENSMUST00000183343 64 ntBASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Gm37458-201ENSMUST00000194055 410 ntBASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Chn2-212ENSMUST00000204115 783 ntTSL 5 BASIC12.68□□□□□ -0.38
Trim54Q9ERP3 6430531B16Rik-204ENSMUST00000209335 898 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Rpl35a-201ENSMUST00000078804 491 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Rsph14-201ENSMUST00000009214 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Esr1-201ENSMUST00000067086 4344 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Dpyd-201ENSMUST00000039177 4492 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Slc19a1-209ENSMUST00000144234 2309 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Lrrc3-201ENSMUST00000057608 4296 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Kcnt1-212ENSMUST00000197917 3711 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Chrdl1-202ENSMUST00000074660 4096 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Extl3-201ENSMUST00000022550 5977 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Jph2-202ENSMUST00000109425 4155 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Rgma-202ENSMUST00000119206 3481 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Dnmt1-201ENSMUST00000004202 5367 ntAPPRIS P4 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Gm7224-201ENSMUST00000121359 2066 ntBASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Myoc-201ENSMUST00000028020 2074 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Mog-201ENSMUST00000102665 1704 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Ptprm-203ENSMUST00000224091 3773 ntBASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Osbp2-203ENSMUST00000102950 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Nhlrc2-201ENSMUST00000071423 3934 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Herpud1-201ENSMUST00000034220 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Dock6-201ENSMUST00000034728 6467 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Trim54Q9ERP3 Trpm1-221ENSMUST00000206706 2350 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Gm45199-201ENSMUST00000207640 1507 ntBASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Igfn1-203ENSMUST00000166193 8989 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Enpp5-201ENSMUST00000024756 2534 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Mapk4-202ENSMUST00000159162 3514 ntTSL 5 BASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Arl13b-201ENSMUST00000089289 3528 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Qrich2-201ENSMUST00000093909 2156 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Olfr707-203ENSMUST00000210644 1817 ntAPPRIS P1 TSL 3 BASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Gm45576-201ENSMUST00000210981 1322 ntTSL 5 BASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Slc35f6-205ENSMUST00000196740 1972 ntTSL 5 BASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Zc3h12d-201ENSMUST00000039484 4092 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Sncaip-209ENSMUST00000179625 2568 ntTSL 5 BASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Gm18983-201ENSMUST00000222884 2729 ntBASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Gm12419-201ENSMUST00000116649 636 ntBASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Gm13937-201ENSMUST00000121000 988 ntBASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Nlrp5-ps-202ENSMUST00000173220 1294 ntBASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Gm8492-201ENSMUST00000182375 987 ntBASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Gm9136-201ENSMUST00000193368 454 ntBASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Ighv1-60-201ENSMUST00000195816 405 ntBASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Gtf3c6-201ENSMUST00000019982 887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Gm8574-201ENSMUST00000203207 924 ntBASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Gm31401-201ENSMUST00000207352 734 ntTSL 3 BASIC12.67□□□□□ -0.38
Trim54Q9ERP3 AC165260.2-203ENSMUST00000224237 336 ntBASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Ndufb4-201ENSMUST00000023514 971 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Olfr284-201ENSMUST00000063289 918 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Gm10775-201ENSMUST00000099425 1203 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Ercc2-202ENSMUST00000108460 3485 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Cd276-202ENSMUST00000165365 3603 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Lyplal1-201ENSMUST00000045388 1578 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Shank2-202ENSMUST00000105900 8169 ntTSL 5 BASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Prkag2-202ENSMUST00000076306 2838 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Pcdhgb5-201ENSMUST00000192535 4670 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Snai2-201ENSMUST00000023356 2031 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Usp5-202ENSMUST00000122110 3076 ntAPPRIS ALT1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Cmtm6-201ENSMUST00000035007 3383 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Prss47-202ENSMUST00000203968 1353 ntAPPRIS P5 TSL 5 BASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Tmem266-202ENSMUST00000085754 4417 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Tbrg1-201ENSMUST00000117654 1984 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Plxna4os1-201ENSMUST00000150314 1977 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Gm19817-201ENSMUST00000199764 2132 ntBASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Mzf1-205ENSMUST00000182515 3340 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Mapk8ip3-202ENSMUST00000115228 5424 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Rgs7bp-201ENSMUST00000063551 7077 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trim54Q9ERP3 Hk2-201ENSMUST00000000642 5513 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 126.1 ms