Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Pcdhgb7-201ENSMUST00000194928 4713 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx56Q9D0R4 Lck-208ENSMUST00000167288 2074 ntTSL 5 BASIC12.3□□□□□ -0.44
Ddx56Q9D0R4 Shank2-202ENSMUST00000105900 8169 ntTSL 5 BASIC12.3□□□□□ -0.44
Ddx56Q9D0R4 Cdk15-201ENSMUST00000114248 1477 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx56Q9D0R4 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC12.3□□□□□ -0.44
Ddx56Q9D0R4 Pip4k2b-201ENSMUST00000018691 5053 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx56Q9D0R4 Grpel2-201ENSMUST00000062991 4030 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx56Q9D0R4 Vamp5-202ENSMUST00000101285 623 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx56Q9D0R4 Myl2-203ENSMUST00000111751 889 ntAPPRIS P1 TSL 3 BASIC12.3□□□□□ -0.44
Ddx56Q9D0R4 Gm15808-201ENSMUST00000119046 604 ntBASIC12.3□□□□□ -0.44
Ddx56Q9D0R4 Dnajb6-202ENSMUST00000012734 1024 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx56Q9D0R4 Gm6548-201ENSMUST00000167498 1165 ntBASIC12.3□□□□□ -0.44
Ddx56Q9D0R4 Gm9866-204ENSMUST00000183238 351 ntTSL 5 BASIC12.3□□□□□ -0.44
Ddx56Q9D0R4 Lect2-202ENSMUST00000225183 823 ntBASIC12.3□□□□□ -0.44
Ddx56Q9D0R4 CT485787.1-201ENSMUST00000225617 968 ntBASIC12.3□□□□□ -0.44
Ddx56Q9D0R4 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx56Q9D0R4 Lect2-201ENSMUST00000062806 837 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx56Q9D0R4 Fxyd1-202ENSMUST00000071697 522 ntAPPRIS P1 TSL 3 BASIC12.3□□□□□ -0.44
Ddx56Q9D0R4 Gm6211-201ENSMUST00000147973 4275 ntBASIC12.3□□□□□ -0.44
Ddx56Q9D0R4 Pcdhga4-201ENSMUST00000194418 4727 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx56Q9D0R4 Pcdhb21-201ENSMUST00000061405 4705 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Ddx56Q9D0R4 Gm26615-201ENSMUST00000181522 3201 ntTSL 2 BASIC12.3□□□□□ -0.44
Ddx56Q9D0R4 Rbm47-209ENSMUST00000201544 5211 ntAPPRIS P3 TSL 5 BASIC12.3□□□□□ -0.44
Ddx56Q9D0R4 Rbm8a-206ENSMUST00000200647 2620 ntTSL 2 BASIC12.3□□□□□ -0.44
Ddx56Q9D0R4 Gm32036-201ENSMUST00000221484 2638 ntTSL 2 BASIC12.3□□□□□ -0.44
Ddx56Q9D0R4 Gm13812-201ENSMUST00000118061 1347 ntBASIC12.3□□□□□ -0.44
Ddx56Q9D0R4 Gm13810-201ENSMUST00000118584 1347 ntBASIC12.3□□□□□ -0.44
Ddx56Q9D0R4 Osr2-204ENSMUST00000228152 1324 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Ddx56Q9D0R4 Nrd1-203ENSMUST00000106644 3784 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Ddx56Q9D0R4 Nras-201ENSMUST00000029445 4470 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx56Q9D0R4 Susd5-201ENSMUST00000135338 4083 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx56Q9D0R4 Lnx2-201ENSMUST00000016664 4557 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx56Q9D0R4 Mfap3l-203ENSMUST00000161421 4142 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx56Q9D0R4 Poc1a-211ENSMUST00000217213 1398 ntTSL 5 BASIC12.3□□□□□ -0.44
Ddx56Q9D0R4 Gm14169-201ENSMUST00000124676 2519 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx56Q9D0R4 A130077B15Rik-201ENSMUST00000219429 2547 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx56Q9D0R4 Tmem132a-201ENSMUST00000025645 3657 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx56Q9D0R4 Apbb2-216ENSMUST00000162366 6540 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Stat5b-202ENSMUST00000107358 5213 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Abi1-211ENSMUST00000149719 3303 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Cyp2c53-ps-203ENSMUST00000176493 1443 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Arvcf-202ENSMUST00000115610 3829 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Fam118b-202ENSMUST00000063782 1662 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Siglech-206ENSMUST00000171077 1934 ntAPPRIS P3 TSL 5 BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Mmel1-203ENSMUST00000105634 2669 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 R3hdm2-210ENSMUST00000164831 2937 ntTSL 5 BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Adgrl3-210ENSMUST00000119788 5394 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Phka2-203ENSMUST00000112377 3947 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Lin52-201ENSMUST00000137170 2270 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Gm33831-201ENSMUST00000211696 1542 ntTSL 5 BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 1700080O16Rik-202ENSMUST00000114866 1232 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Mrpl40-202ENSMUST00000119273 778 ntTSL 3 BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Gm8566-201ENSMUST00000120174 465 ntBASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Gm12196-201ENSMUST00000120954 262 ntBASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Gm6039-201ENSMUST00000121667 1250 ntBASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Ankrd29-202ENSMUST00000122408 850 ntTSL 5 BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Gm13165-201ENSMUST00000152923 383 ntTSL 5 BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 4930448A20Rik-201ENSMUST00000205988 1034 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Gm18636-201ENSMUST00000218846 1066 ntBASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 AC133602.1-201ENSMUST00000227510 509 ntBASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Fabp4-201ENSMUST00000029041 896 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Aurkc-201ENSMUST00000086248 1154 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Gm5537-201ENSMUST00000091117 1252 ntBASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Golga2-202ENSMUST00000100194 4373 ntAPPRIS P4 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Speg-201ENSMUST00000087122 10801 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Gm43984-201ENSMUST00000204572 2864 ntBASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Srsf5-205ENSMUST00000110356 1568 ntAPPRIS P3 TSL 5 BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Olfr156-203ENSMUST00000214843 1559 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Tbl1xr1-211ENSMUST00000202747 4209 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Acsl1-202ENSMUST00000110371 2100 ntTSL 5 BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Nrde2-201ENSMUST00000021596 3718 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Rab27b-201ENSMUST00000069749 2671 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Ctnnbl1-201ENSMUST00000029178 2442 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Ttc30a2-201ENSMUST00000099995 2431 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Wdr17-211ENSMUST00000175915 4619 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Shc1-201ENSMUST00000039110 3250 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Ildr1-201ENSMUST00000023617 3042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Fggy-201ENSMUST00000043335 1910 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Csf1-201ENSMUST00000014743 4176 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Mpv17-202ENSMUST00000200744 1653 ntTSL 2 BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Luc7l-201ENSMUST00000025023 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Itgb4-204ENSMUST00000106460 5919 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Ddx56Q9D0R4 Tmprss4-201ENSMUST00000034599 2284 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ddx56Q9D0R4 Trpm1-210ENSMUST00000205731 2575 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Ddx56Q9D0R4 Slc6a18-204ENSMUST00000220650 1728 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Ddx56Q9D0R4 Hnrnph2-205ENSMUST00000113203 2315 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Ddx56Q9D0R4 Armc5-201ENSMUST00000044660 3834 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ddx56Q9D0R4 Pdzk1-201ENSMUST00000058865 2406 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ddx56Q9D0R4 Entpd4-201ENSMUST00000064831 1842 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Ddx56Q9D0R4 Tnk1-201ENSMUST00000001626 2778 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ddx56Q9D0R4 Coch-201ENSMUST00000085412 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ddx56Q9D0R4 Slc44a1-204ENSMUST00000107647 2176 ntTSL 2 BASIC12.28□□□□□ -0.44
Ddx56Q9D0R4 Fgf8-204ENSMUST00000111925 702 ntTSL 5 BASIC12.28□□□□□ -0.44
Ddx56Q9D0R4 Gm14724-201ENSMUST00000118400 537 ntBASIC12.28□□□□□ -0.44
Ddx56Q9D0R4 Gm11290-201ENSMUST00000124833 396 ntTSL 3 BASIC12.28□□□□□ -0.44
Ddx56Q9D0R4 Gm42420-201ENSMUST00000126621 634 ntAPPRIS P1 TSL 3 BASIC12.28□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 30.9 ms