Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Gm9415-201ENSMUST00000200462 1321 ntBASIC12.36□□□□□ -0.43
Clp1Q99LI9 Tirap-203ENSMUST00000176531 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Clp1Q99LI9 Cd59a-201ENSMUST00000040423 1691 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Clp1Q99LI9 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC12.35□□□□□ -0.43
Clp1Q99LI9 Dctn1-205ENSMUST00000113919 4292 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
Clp1Q99LI9 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC12.35□□□□□ -0.43
Clp1Q99LI9 Gm9947-201ENSMUST00000067599 2920 ntBASIC12.35□□□□□ -0.43
Clp1Q99LI9 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Clp1Q99LI9 Pank4-202ENSMUST00000070953 2706 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Clp1Q99LI9 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Clp1Q99LI9 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC12.35□□□□□ -0.43
Clp1Q99LI9 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Clp1Q99LI9 Dph3-202ENSMUST00000067955 2953 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Clp1Q99LI9 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Clp1Q99LI9 1700125H20Rik-202ENSMUST00000100681 687 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Clp1Q99LI9 Atp6v1g2-202ENSMUST00000118384 483 ntTSL 2 BASIC12.35□□□□□ -0.43
Clp1Q99LI9 Gm15569-201ENSMUST00000133675 594 ntTSL 3 BASIC12.35□□□□□ -0.43
Clp1Q99LI9 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC12.35□□□□□ -0.43
Clp1Q99LI9 Gm22846-201ENSMUST00000157706 270 ntBASIC12.35□□□□□ -0.43
Clp1Q99LI9 Gm6548-201ENSMUST00000167498 1165 ntBASIC12.35□□□□□ -0.43
Clp1Q99LI9 Gm42953-201ENSMUST00000199363 581 ntTSL 3 BASIC12.35□□□□□ -0.43
Clp1Q99LI9 Gm30978-201ENSMUST00000211581 1066 ntTSL 5 BASIC12.35□□□□□ -0.43
Clp1Q99LI9 Tmem63b-201ENSMUST00000113523 3284 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Clp1Q99LI9 Maged2-202ENSMUST00000112697 1851 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Clp1Q99LI9 Herpud1-201ENSMUST00000034220 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Clp1Q99LI9 Tarm1-203ENSMUST00000203821 1535 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Clp1Q99LI9 Spag6-201ENSMUST00000095132 2458 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Clp1Q99LI9 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Clp1Q99LI9 Astl-201ENSMUST00000059839 2377 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
Clp1Q99LI9 4931429L15Rik-201ENSMUST00000159565 2037 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
Clp1Q99LI9 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Clp1Q99LI9 Gm26714-201ENSMUST00000181338 1655 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Clp1Q99LI9 Zfp202-201ENSMUST00000026693 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Clp1Q99LI9 Mcm8-202ENSMUST00000066559 3397 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
Clp1Q99LI9 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Chrna3-201ENSMUST00000034851 4358 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Slc9a3-204ENSMUST00000225423 2589 ntAPPRIS ALT2 BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Gm11413-201ENSMUST00000155822 1461 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Aldoc-202ENSMUST00000102478 1700 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Neu2-207ENSMUST00000172222 1715 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Plxna4os1-201ENSMUST00000150314 1977 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Prkar1b-202ENSMUST00000110889 2457 ntTSL 5 BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Slc38a5-203ENSMUST00000115591 1853 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Pdik1l-201ENSMUST00000061234 4686 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Nrf1-206ENSMUST00000115204 2047 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Gm12194-201ENSMUST00000117756 1012 ntBASIC12.34□□□□□ -0.43
Clp1Q99LI9 Gm15329-201ENSMUST00000121408 155 ntBASIC12.34□□□□□ -0.43
Clp1Q99LI9 Tmsb15l-201ENSMUST00000127404 816 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Fhit-201ENSMUST00000160340 1094 ntTSL 5 BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Fhit-208ENSMUST00000179394 453 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Gm7719-201ENSMUST00000182374 975 ntBASIC12.34□□□□□ -0.43
Clp1Q99LI9 1700013M08Rik-202ENSMUST00000200080 798 ntBASIC12.34□□□□□ -0.43
Clp1Q99LI9 Gm44124-201ENSMUST00000204159 472 ntBASIC12.34□□□□□ -0.43
Clp1Q99LI9 1700003I16Rik-201ENSMUST00000205198 1058 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Gm35657-201ENSMUST00000215869 989 ntTSL 5 BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Zmiz1os1-202ENSMUST00000225188 1223 ntBASIC12.34□□□□□ -0.43
Clp1Q99LI9 Spata46-201ENSMUST00000056991 771 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Ifi27-203ENSMUST00000076788 708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Prkag3-206ENSMUST00000188073 2832 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Muc6-202ENSMUST00000189314 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Adora1-202ENSMUST00000086465 4968 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Gm5434-202ENSMUST00000222384 1451 ntBASIC12.34□□□□□ -0.43
Clp1Q99LI9 Gm5434-201ENSMUST00000071825 1451 ntBASIC12.34□□□□□ -0.43
Clp1Q99LI9 Ccdc90b-202ENSMUST00000085017 1494 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Gm42957-201ENSMUST00000137564 3624 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
Clp1Q99LI9 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC12.33□□□□□ -0.43
Clp1Q99LI9 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Clp1Q99LI9 Gm37785-201ENSMUST00000195783 2408 ntBASIC12.33□□□□□ -0.43
Clp1Q99LI9 Lsm11-202ENSMUST00000129820 6453 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Clp1Q99LI9 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Clp1Q99LI9 Cdc7-201ENSMUST00000031221 2961 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.43
Clp1Q99LI9 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Clp1Q99LI9 Dnajc16-201ENSMUST00000038014 5969 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Clp1Q99LI9 Cyyr1-201ENSMUST00000114174 5464 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Clp1Q99LI9 Kcnk2-202ENSMUST00000110920 3572 ntAPPRIS ALT1 TSL 5 BASIC12.33□□□□□ -0.44
Clp1Q99LI9 Kyat1-202ENSMUST00000113659 1367 ntTSL 5 BASIC12.33□□□□□ -0.44
Clp1Q99LI9 Gm29100-201ENSMUST00000187564 4410 ntBASIC12.33□□□□□ -0.44
Clp1Q99LI9 Gm38089-201ENSMUST00000193585 1514 ntBASIC12.33□□□□□ -0.44
Clp1Q99LI9 Rab3c-202ENSMUST00000223922 2398 ntBASIC12.33□□□□□ -0.44
Clp1Q99LI9 Zeb2-201ENSMUST00000028229 5335 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Clp1Q99LI9 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Clp1Q99LI9 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Clp1Q99LI9 Gm12179-201ENSMUST00000118344 1272 ntBASIC12.33□□□□□ -0.44
Clp1Q99LI9 Klra4-201ENSMUST00000119096 1245 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 51.3 ms