Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Bloc1s2-ps-201ENSMUST00000183232 432 ntBASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Mir6979-201ENSMUST00000183927 56 ntBASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Gm42937-201ENSMUST00000197360 752 ntBASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Ceacam1-209ENSMUST00000206687 1061 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 AC099934.4-201ENSMUST00000220745 523 ntTSL 5 BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 AC124171.1-201ENSMUST00000221151 567 ntTSL 5 BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Cdk19os-201ENSMUST00000044774 534 ntTSL 5 BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Dtl-201ENSMUST00000027933 4212 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Sp100-213ENSMUST00000155094 1666 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Nfatc2-209ENSMUST00000171689 2742 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 1500009C09Rik-201ENSMUST00000136948 1526 ntAPPRIS P5 TSL 3 BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Gm4869-201ENSMUST00000197549 2955 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 4930431P19Rik-202ENSMUST00000207761 2959 ntBASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Borcs7-201ENSMUST00000074912 2176 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Gm11696-203ENSMUST00000188296 1793 ntTSL 3 BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Pou2f1-202ENSMUST00000069609 2402 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Acp5-203ENSMUST00000165735 1376 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Astn1-209ENSMUST00000194369 3344 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Slc45a3-201ENSMUST00000027695 3340 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Smc4-202ENSMUST00000107803 3983 ntTSL 5 BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Nr5a1-201ENSMUST00000028084 2947 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Ldb3-204ENSMUST00000064098 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Gpr173-201ENSMUST00000070316 4855 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Gm31518-201ENSMUST00000211925 2548 ntTSL 5 BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Hdac7-205ENSMUST00000118294 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Cyb5b-201ENSMUST00000034400 4316 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Gm44755-201ENSMUST00000207830 2102 ntBASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Elovl3-201ENSMUST00000043739 1494 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Dzip1l-202ENSMUST00000112884 3791 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Vrk1-201ENSMUST00000021539 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 H2-Q1-202ENSMUST00000105041 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Gm18986-201ENSMUST00000216029 1986 ntBASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Rprd1b-203ENSMUST00000109518 4399 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Tsta3-201ENSMUST00000023231 1311 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Slc19a1-209ENSMUST00000144234 2309 ntAPPRIS P2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Angptl4-201ENSMUST00000002360 3053 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Rbl2-210ENSMUST00000211136 4504 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Tmc7-201ENSMUST00000044195 4546 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Chek1-202ENSMUST00000172702 3797 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Rgs8-201ENSMUST00000041776 8474 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Ccnk-202ENSMUST00000221167 2789 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Ddx11-205ENSMUST00000224497 4141 ntAPPRIS ALT2 BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Gm43622-201ENSMUST00000200140 2019 ntBASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Prx-201ENSMUST00000065487 4497 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Add2-207ENSMUST00000203724 3143 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Etfrf1-202ENSMUST00000111719 968 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Rbm3-ps-201ENSMUST00000121422 465 ntBASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Gm22902-201ENSMUST00000158488 302 ntBASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Ddt-201ENSMUST00000001716 649 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Trav13d-3-201ENSMUST00000179512 391 ntAPPRIS P1 BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Trav13n-3-201ENSMUST00000179580 337 ntAPPRIS P1 BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Gm26956-201ENSMUST00000182176 986 ntBASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Gm27341-201ENSMUST00000183570 106 ntBASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Gm2260-201ENSMUST00000184965 657 ntBASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Ccl4-201ENSMUST00000019074 660 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Gm31256-201ENSMUST00000194705 506 ntBASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Dmrt1i-203ENSMUST00000197311 718 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Gm5869-201ENSMUST00000200248 1257 ntBASIC11.37□□□□□ -0.59
Col28a1Q2UY11 1700018A23Rik-201ENSMUST00000201350 398 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Gm17931-201ENSMUST00000208132 634 ntBASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Gm31793-201ENSMUST00000218557 415 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Psma1-201ENSMUST00000033008 1201 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Mfsd13b-201ENSMUST00000033166 1883 ntAPPRIS P2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Pip4k2c-201ENSMUST00000013970 3307 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Wac-216ENSMUST00000171486 1608 ntTSL 5 BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Camkk1-201ENSMUST00000092937 3424 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Rasal2-204ENSMUST00000132699 4013 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Rsad1-201ENSMUST00000040487 4143 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Ablim2-206ENSMUST00000114206 3528 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Fkbp15-204ENSMUST00000107461 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Mbtps2-203ENSMUST00000112522 3891 ntTSL 2 BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Mbtps2-208ENSMUST00000179062 3890 ntAPPRIS P1 TSL 2 BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Vps54-201ENSMUST00000006221 4323 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Adgrl3-210ENSMUST00000119788 5394 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Gm45187-201ENSMUST00000207697 2760 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Gm10782-202ENSMUST00000223775 1480 ntBASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Anp32e-204ENSMUST00000168106 2890 ntTSL 5 BASIC11.37□□□□□ -0.59
Col28a1Q2UY11 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Igf1-204ENSMUST00000121161 1344 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 D930032P07Rik-201ENSMUST00000181393 1314 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Gm8862-201ENSMUST00000198379 1346 ntBASIC11.36□□□□□ -0.59
Col28a1Q2UY11 St14-201ENSMUST00000034478 3259 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Larp7-201ENSMUST00000029588 2121 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Nr5a2-205ENSMUST00000192929 1756 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Zfp108-202ENSMUST00000205982 2577 ntAPPRIS P2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Hsd3b3-203ENSMUST00000107018 1443 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Radil-203ENSMUST00000110784 3106 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Slc17a5-202ENSMUST00000117645 3114 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 1700025G04Rik-201ENSMUST00000044581 9559 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Gm21939-201ENSMUST00000221137 2773 ntBASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Zc3h18-205ENSMUST00000176629 3672 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Dna2-203ENSMUST00000131422 4122 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Madd-207ENSMUST00000111369 5582 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 34.4 ms