Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sox9Q04887 AC174797.1-201ENSMUST00000224339 1649 ntBASIC12.11□□□□□ -0.47
Sox9Q04887 Dhtkd1-202ENSMUST00000095147 5480 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Sox9Q04887 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sox9Q04887 Eif5b-201ENSMUST00000027252 7797 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
Sox9Q04887 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC12.11□□□□□ -0.47
Sox9Q04887 Fn1-211ENSMUST00000187938 7965 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sox9Q04887 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sox9Q04887 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sox9Q04887 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sox9Q04887 Gm13286-201ENSMUST00000117750 537 ntBASIC12.11□□□□□ -0.47
Sox9Q04887 Gm12194-201ENSMUST00000117756 1012 ntBASIC12.11□□□□□ -0.47
Sox9Q04887 Gm14052-201ENSMUST00000121434 1031 ntBASIC12.11□□□□□ -0.47
Sox9Q04887 Gm13981-201ENSMUST00000122360 447 ntBASIC12.11□□□□□ -0.47
Sox9Q04887 Gm13026-201ENSMUST00000140113 608 ntTSL 5 BASIC12.11□□□□□ -0.47
Sox9Q04887 9430093N23Rik-201ENSMUST00000152494 515 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Sox9Q04887 Pfdn5-203ENSMUST00000165671 830 ntTSL 2 BASIC12.11□□□□□ -0.47
Sox9Q04887 Pdcd5-ps-201ENSMUST00000191699 381 ntBASIC12.11□□□□□ -0.47
Sox9Q04887 Gm35986-201ENSMUST00000197370 655 ntTSL 2 BASIC12.11□□□□□ -0.47
Sox9Q04887 Prrg2-211ENSMUST00000211337 676 ntTSL 3 BASIC12.11□□□□□ -0.47
Sox9Q04887 Nutf2-202ENSMUST00000212042 645 ntAPPRIS P1 TSL 3 BASIC12.11□□□□□ -0.47
Sox9Q04887 CT030170.2-201ENSMUST00000223267 126 ntBASIC12.11□□□□□ -0.47
Sox9Q04887 1810013D15Rik-201ENSMUST00000029827 300 ntTSL 5 BASIC12.11□□□□□ -0.47
Sox9Q04887 Myl9-201ENSMUST00000088552 1128 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sox9Q04887 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
Sox9Q04887 Map3k12-201ENSMUST00000023812 5182 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sox9Q04887 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sox9Q04887 Gpr176-201ENSMUST00000039160 3899 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sox9Q04887 Gm45706-201ENSMUST00000213063 2136 ntBASIC12.11□□□□□ -0.47
Sox9Q04887 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sox9Q04887 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sox9Q04887 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC12.11□□□□□ -0.47
Sox9Q04887 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC12.11□□□□□ -0.47
Sox9Q04887 Washc5-201ENSMUST00000022976 4033 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sox9Q04887 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sox9Q04887 Rnf44-218ENSMUST00000177950 3941 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Sox9Q04887 Mob3a-201ENSMUST00000003438 2682 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sox9Q04887 Pisd-203ENSMUST00000120591 2491 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
Sox9Q04887 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Sox9Q04887 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sox9Q04887 Gm8899-201ENSMUST00000214635 1332 ntBASIC12.11□□□□□ -0.47
Sox9Q04887 AC154262.2-202ENSMUST00000225158 1331 ntBASIC12.11□□□□□ -0.47
Sox9Q04887 Gm14243-201ENSMUST00000131401 2172 ntTSL 2 BASIC12.11□□□□□ -0.47
Sox9Q04887 Hectd1-201ENSMUST00000042052 8988 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Sox9Q04887 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC12.1□□□□□ -0.47
Sox9Q04887 Dpp9-201ENSMUST00000038794 3374 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sox9Q04887 Armc5-201ENSMUST00000044660 3834 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sox9Q04887 Smim13-201ENSMUST00000165561 4483 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sox9Q04887 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sox9Q04887 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sox9Q04887 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Sox9Q04887 4921524J17Rik-201ENSMUST00000047749 1587 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sox9Q04887 Coro6-202ENSMUST00000052515 1476 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Sox9Q04887 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sox9Q04887 Runx1t1-204ENSMUST00000105566 6090 ntAPPRIS ALT1 TSL 5 BASIC12.1□□□□□ -0.47
Sox9Q04887 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sox9Q04887 Slc40a1-201ENSMUST00000027137 3370 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sox9Q04887 Gm23612-201ENSMUST00000103823 110 ntBASIC12.1□□□□□ -0.47
Sox9Q04887 Tnnt3-209ENSMUST00000105947 780 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Sox9Q04887 Gm3415-201ENSMUST00000110595 924 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Sox9Q04887 Lemd1-201ENSMUST00000112357 964 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sox9Q04887 Gm13422-201ENSMUST00000118834 504 ntBASIC12.1□□□□□ -0.47
Sox9Q04887 Gm15196-201ENSMUST00000121406 482 ntBASIC12.1□□□□□ -0.47
Sox9Q04887 Tnfrsf14-201ENSMUST00000123514 1018 ntAPPRIS P2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sox9Q04887 Gm15911-201ENSMUST00000138992 809 ntTSL 3 BASIC12.1□□□□□ -0.47
Sox9Q04887 Mir432-201ENSMUST00000157230 75 ntBASIC12.1□□□□□ -0.47
Sox9Q04887 Gm13272-201ENSMUST00000179425 811 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
Sox9Q04887 Gm23576-201ENSMUST00000179918 110 ntBASIC12.1□□□□□ -0.47
Sox9Q04887 Gm4895-201ENSMUST00000181646 1137 ntBASIC12.1□□□□□ -0.47
Sox9Q04887 Gm37365-201ENSMUST00000193109 409 ntBASIC12.1□□□□□ -0.47
Sox9Q04887 Gm7504-201ENSMUST00000201449 424 ntBASIC12.1□□□□□ -0.47
Sox9Q04887 Gm44882-201ENSMUST00000205702 802 ntBASIC12.1□□□□□ -0.47
Sox9Q04887 Gm5907-202ENSMUST00000210969 661 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Sox9Q04887 Gm18856-203ENSMUST00000222015 483 ntTSL 2 BASIC12.1□□□□□ -0.47
Sox9Q04887 CT010506.1-201ENSMUST00000223673 349 ntBASIC12.1□□□□□ -0.47
Sox9Q04887 AC154436.1-201ENSMUST00000227272 782 ntBASIC12.1□□□□□ -0.47
Sox9Q04887 Gm3402-202ENSMUST00000077133 924 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Sox9Q04887 Olfr1163-201ENSMUST00000099835 1043 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
Sox9Q04887 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sox9Q04887 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sox9Q04887 Wdr45-203ENSMUST00000115688 1510 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Sox9Q04887 Gm45199-201ENSMUST00000207640 1507 ntBASIC12.1□□□□□ -0.47
Sox9Q04887 Mob1a-201ENSMUST00000038658 4119 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Sox9Q04887 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sox9Q04887 Mtus1-202ENSMUST00000059115 6548 ntTSL 5 BASIC12.1□□□□□ -0.47
Sox9Q04887 Cep68-201ENSMUST00000050611 4804 ntAPPRIS P2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sox9Q04887 Zc3hc1-202ENSMUST00000102992 1865 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Sox9Q04887 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sox9Q04887 Kif1c-202ENSMUST00000094499 5168 ntAPPRIS P2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sox9Q04887 Il2rb-201ENSMUST00000089398 2692 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sox9Q04887 Jrk-201ENSMUST00000050234 5853 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sox9Q04887 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sox9Q04887 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC12.1□□□□□ -0.47
Sox9Q04887 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Sox9Q04887 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sox9Q04887 Gm8038-201ENSMUST00000164674 2044 ntBASIC12.1□□□□□ -0.47
Sox9Q04887 Rgs6-222ENSMUST00000202210 3069 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Sox9Q04887 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sox9Q04887 Gm45266-201ENSMUST00000210111 2173 ntBASIC12.09□□□□□ -0.47
Sox9Q04887 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 48.7 ms