Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Gm12200-201ENSMUST00000144876 1858 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
Sdc1P18828 Arfgef3-201ENSMUST00000019999 5606 ntAPPRIS ALT2 TSL 1 (best) BASIC9.53□□□□□ -0.88
Sdc1P18828 Asns-202ENSMUST00000115542 2016 ntAPPRIS P1 TSL 5 BASIC9.53□□□□□ -0.88
Sdc1P18828 Cyp21a2-ps-201ENSMUST00000172970 1383 ntBASIC9.53□□□□□ -0.88
Sdc1P18828 Agrn-203ENSMUST00000105575 7262 ntTSL 5 BASIC9.53□□□□□ -0.88
Sdc1P18828 Ap4m1-201ENSMUST00000019662 3479 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
Sdc1P18828 Tmem88b-201ENSMUST00000097742 3471 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
Sdc1P18828 Angel1-201ENSMUST00000021682 3850 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
Sdc1P18828 Cnr2-202ENSMUST00000097843 3867 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
Sdc1P18828 Tnip1-206ENSMUST00000108889 2834 ntAPPRIS P3 TSL 1 (best) BASIC9.53□□□□□ -0.88
Sdc1P18828 Qtrt2-201ENSMUST00000023387 2838 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
Sdc1P18828 Nos1-206ENSMUST00000142742 10123 ntAPPRIS P2 TSL 5 BASIC9.53□□□□□ -0.88
Sdc1P18828 Nox4-201ENSMUST00000032781 3753 ntAPPRIS P2 TSL 1 (best) BASIC9.53□□□□□ -0.88
Sdc1P18828 Prom2-202ENSMUST00000103214 4190 ntAPPRIS ALT2 TSL 1 (best) BASIC9.53□□□□□ -0.88
Sdc1P18828 Bicd2-202ENSMUST00000110084 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC9.53□□□□□ -0.88
Sdc1P18828 Pcdh10-202ENSMUST00000170695 8234 ntAPPRIS P3 TSL 1 (best) BASIC9.53□□□□□ -0.88
Sdc1P18828 Cnga4-201ENSMUST00000033187 2484 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
Sdc1P18828 Olfr1495-203ENSMUST00000216980 2063 ntAPPRIS P1 TSL 5 BASIC9.53□□□□□ -0.88
Sdc1P18828 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
Sdc1P18828 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC9.53□□□□□ -0.88
Sdc1P18828 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
Sdc1P18828 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC9.53□□□□□ -0.88
Sdc1P18828 Gm15610-201ENSMUST00000120584 195 ntBASIC9.53□□□□□ -0.88
Sdc1P18828 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC9.53□□□□□ -0.88
Sdc1P18828 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC9.53□□□□□ -0.88
Sdc1P18828 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC9.53□□□□□ -0.88
Sdc1P18828 Gm7558-201ENSMUST00000193221 1165 ntBASIC9.53□□□□□ -0.88
Sdc1P18828 Gm19220-201ENSMUST00000222682 803 ntBASIC9.53□□□□□ -0.88
Sdc1P18828 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC9.53□□□□□ -0.88
Sdc1P18828 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
Sdc1P18828 Tmprss2-201ENSMUST00000000395 3159 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
Sdc1P18828 Olfr46-203ENSMUST00000214180 7750 ntAPPRIS ALT2 TSL 5 BASIC9.53□□□□□ -0.88
Sdc1P18828 Arhgap24-204ENSMUST00000112852 2783 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
Sdc1P18828 Gm19165-201ENSMUST00000204453 1982 ntBASIC9.53□□□□□ -0.88
Sdc1P18828 Usp11-201ENSMUST00000033383 3467 ntAPPRIS P1 TSL 2 BASIC9.53□□□□□ -0.88
Sdc1P18828 Alas1-202ENSMUST00000112524 3089 ntAPPRIS P2 TSL 1 (best) BASIC9.53□□□□□ -0.88
Sdc1P18828 Tasp1-202ENSMUST00000099304 2127 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
Sdc1P18828 Kdm3a-202ENSMUST00000167220 4853 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
Sdc1P18828 Tasp1-203ENSMUST00000110079 2258 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
Sdc1P18828 Rpap2-202ENSMUST00000112650 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC9.53□□□□□ -0.88
Sdc1P18828 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC9.53□□□□□ -0.88
Sdc1P18828 Atp6v0e2-202ENSMUST00000203011 1612 ntTSL 2 BASIC9.53□□□□□ -0.88
Sdc1P18828 Camk1g-201ENSMUST00000016323 2469 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
Sdc1P18828 6430562O15Rik-201ENSMUST00000180491 2488 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
Sdc1P18828 Serpina1b-203ENSMUST00000186166 1762 ntAPPRIS P1 TSL 5 BASIC9.52□□□□□ -0.88
Sdc1P18828 Tbl3-202ENSMUST00000126319 5226 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.88
Sdc1P18828 Gm37031-201ENSMUST00000195487 2530 ntBASIC9.52□□□□□ -0.88
Sdc1P18828 Syn2-203ENSMUST00000203450 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC9.52□□□□□ -0.88
Sdc1P18828 Golm1-201ENSMUST00000022039 3954 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.88
Sdc1P18828 Gm18210-201ENSMUST00000209001 1524 ntBASIC9.52□□□□□ -0.88
Sdc1P18828 Gm13920-201ENSMUST00000146134 1663 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
Sdc1P18828 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
Sdc1P18828 Nrp1-201ENSMUST00000026917 3597 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
Sdc1P18828 Gatb-202ENSMUST00000107672 1820 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
Sdc1P18828 Gm43597-202ENSMUST00000201992 4620 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
Sdc1P18828 Tmprss5-202ENSMUST00000165088 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC9.52□□□□□ -0.89
Sdc1P18828 Fcgbp-203ENSMUST00000138392 7926 ntAPPRIS ALT2 TSL 5 BASIC9.52□□□□□ -0.89
Sdc1P18828 Fcgbp-201ENSMUST00000076648 7928 ntAPPRIS P2 TSL 5 BASIC9.52□□□□□ -0.89
Sdc1P18828 Sirpa-204ENSMUST00000103203 3674 ntAPPRIS P3 TSL 5 BASIC9.52□□□□□ -0.89
Sdc1P18828 Tnnt3-211ENSMUST00000105949 955 ntAPPRIS ALT2 TSL 5 BASIC9.52□□□□□ -0.89
Sdc1P18828 Dcun1d2-203ENSMUST00000110839 2937 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
Sdc1P18828 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
Sdc1P18828 Ldha-ps-201ENSMUST00000119390 995 ntBASIC9.52□□□□□ -0.89
Sdc1P18828 Gm12341-201ENSMUST00000119724 503 ntBASIC9.52□□□□□ -0.89
Sdc1P18828 Arhgap33os-201ENSMUST00000124276 2648 ntTSL 2 BASIC9.52□□□□□ -0.89
Sdc1P18828 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC9.52□□□□□ -0.89
Sdc1P18828 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC9.52□□□□□ -0.89
Sdc1P18828 Sgca-205ENSMUST00000166320 1428 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
Sdc1P18828 Gm8000-201ENSMUST00000188378 592 ntBASIC9.52□□□□□ -0.89
Sdc1P18828 Gm37047-201ENSMUST00000191992 533 ntTSL 5 BASIC9.52□□□□□ -0.89
Sdc1P18828 Rasgef1a-203ENSMUST00000203804 2183 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
Sdc1P18828 Gm4768-201ENSMUST00000206199 686 ntBASIC9.52□□□□□ -0.89
Sdc1P18828 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
Sdc1P18828 Gm7789-202ENSMUST00000211273 1400 ntBASIC9.52□□□□□ -0.89
Sdc1P18828 AC125209.1-201ENSMUST00000225812 766 ntBASIC9.52□□□□□ -0.89
Sdc1P18828 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC9.52□□□□□ -0.89
Sdc1P18828 Olfr1420-201ENSMUST00000072784 1444 ntAPPRIS P1 BASIC9.52□□□□□ -0.89
Sdc1P18828 Il34-201ENSMUST00000076846 1709 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
Sdc1P18828 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC9.52□□□□□ -0.89
Sdc1P18828 Pde1b-205ENSMUST00000227955 3258 ntAPPRIS ALT1 BASIC9.52□□□□□ -0.89
Sdc1P18828 Pdgfrb-201ENSMUST00000025522 5407 ntAPPRIS P2 TSL 1 (best) BASIC9.52□□□□□ -0.89
Sdc1P18828 Fdxacb1-201ENSMUST00000042391 2658 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
Sdc1P18828 Ing3-202ENSMUST00000115389 2546 ntTSL 5 BASIC9.52□□□□□ -0.89
Sdc1P18828 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC9.52□□□□□ -0.89
Sdc1P18828 Cyp2b10-202ENSMUST00000072438 1916 ntAPPRIS P2 TSL 1 (best) BASIC9.52□□□□□ -0.89
Sdc1P18828 Ctnnd1-204ENSMUST00000099941 5783 ntTSL 5 BASIC9.52□□□□□ -0.89
Sdc1P18828 Clip1-204ENSMUST00000111564 5609 ntAPPRIS ALT2 TSL 1 (best) BASIC9.52□□□□□ -0.89
Sdc1P18828 Arhgef10-202ENSMUST00000110800 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC9.52□□□□□ -0.89
Sdc1P18828 Olfr707-204ENSMUST00000213251 1777 ntAPPRIS P1 TSL 5 BASIC9.52□□□□□ -0.89
Sdc1P18828 Adgrv1-214ENSMUST00000224088 1492 ntBASIC9.52□□□□□ -0.89
Sdc1P18828 Tmem159-201ENSMUST00000033210 1484 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
Sdc1P18828 Pik3cb-201ENSMUST00000035037 6478 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
Sdc1P18828 Rxrg-201ENSMUST00000015987 2110 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
Sdc1P18828 Traf3ip3-201ENSMUST00000043550 2122 ntAPPRIS P2 TSL 1 (best) BASIC9.52□□□□□ -0.89
Sdc1P18828 Gm42427-201ENSMUST00000200473 5292 ntBASIC9.52□□□□□ -0.89
Sdc1P18828 Gfm2-201ENSMUST00000022170 3089 ntAPPRIS ALT2 TSL 2 BASIC9.52□□□□□ -0.89
Sdc1P18828 Satb1-207ENSMUST00000140979 3748 ntAPPRIS ALT2 TSL 5 BASIC9.52□□□□□ -0.89
Sdc1P18828 Cycs-202ENSMUST00000161401 3123 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
Sdc1P18828 Gm6714-201ENSMUST00000218677 2330 ntBASIC9.51□□□□□ -0.89
Sdc1P18828 AC123738.2-201ENSMUST00000223791 1899 ntBASIC9.51□□□□□ -0.89
Retrieved 100 of 76,532 protein–RNA pairs in 61.1 ms