Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Col1a1P11087 Slc24a5-201ENSMUST00000070353 1954 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col1a1P11087 Trappc8-202ENSMUST00000097658 2703 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col1a1P11087 Dcaf11-202ENSMUST00000117236 2538 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col1a1P11087 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
Col1a1P11087 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col1a1P11087 Lcp2-202ENSMUST00000109329 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col1a1P11087 Pink1-202ENSMUST00000105816 1465 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Col1a1P11087 Zfp639-201ENSMUST00000029203 1458 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col1a1P11087 5033428I22Rik-201ENSMUST00000181638 2040 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Col1a1P11087 Sec13-201ENSMUST00000032440 1353 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col1a1P11087 Gm11475-201ENSMUST00000118482 476 ntBASIC13.55□□□□□ -0.24
Col1a1P11087 Isg20-203ENSMUST00000120331 845 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col1a1P11087 Gm16341-201ENSMUST00000126385 377 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Col1a1P11087 Nrg4-204ENSMUST00000130158 1000 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Col1a1P11087 Gm9372-201ENSMUST00000168454 430 ntBASIC13.55□□□□□ -0.24
Col1a1P11087 Gm17606-201ENSMUST00000169818 234 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Col1a1P11087 Gm44696-201ENSMUST00000181943 1229 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Col1a1P11087 Plac9a-203ENSMUST00000183725 439 ntTSL 3 BASIC13.55□□□□□ -0.24
Col1a1P11087 Plac9b-202ENSMUST00000183811 396 ntTSL 3 BASIC13.55□□□□□ -0.24
Col1a1P11087 Colca2-202ENSMUST00000215038 1269 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Col1a1P11087 Gm13271-201ENSMUST00000094992 549 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
Col1a1P11087 Nudt13-203ENSMUST00000223663 1633 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Col1a1P11087 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
Col1a1P11087 Anapc7-202ENSMUST00000119792 3599 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Col1a1P11087 Xpr1-203ENSMUST00000111775 4094 ntTSL 5 BASIC13.54□□□□□ -0.24
Col1a1P11087 Alg12-204ENSMUST00000162183 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col1a1P11087 Bcat2-208ENSMUST00000211173 1684 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Col1a1P11087 Ppp2r5c-205ENSMUST00000221715 2367 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Col1a1P11087 Nfatc2-209ENSMUST00000171689 2742 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Col1a1P11087 Riok1-201ENSMUST00000021866 2738 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col1a1P11087 Adamtsl3-204ENSMUST00000173828 2292 ntTSL 5 BASIC13.54□□□□□ -0.24
Col1a1P11087 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Col1a1P11087 Srrt-212ENSMUST00000199243 2988 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col1a1P11087 Myzap-201ENSMUST00000093823 2283 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col1a1P11087 Cars-201ENSMUST00000010899 3222 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col1a1P11087 Hist1h2be-201ENSMUST00000051091 2506 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col1a1P11087 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col1a1P11087 Tm9sf2-201ENSMUST00000026624 3107 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col1a1P11087 Apol9a-201ENSMUST00000081776 1475 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col1a1P11087 Gm16564-201ENSMUST00000162545 3010 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Col1a1P11087 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col1a1P11087 Trpm1-210ENSMUST00000205731 2575 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Col1a1P11087 Ptcd3-201ENSMUST00000082094 2581 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col1a1P11087 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col1a1P11087 Aifm2-203ENSMUST00000099706 3086 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col1a1P11087 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col1a1P11087 Gcg-201ENSMUST00000102733 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col1a1P11087 Gm22937-201ENSMUST00000103954 131 ntBASIC13.54□□□□□ -0.24
Col1a1P11087 Gm9133-201ENSMUST00000118289 540 ntBASIC13.54□□□□□ -0.24
Col1a1P11087 Gm11642-201ENSMUST00000150442 440 ntTSL 5 BASIC13.54□□□□□ -0.24
Col1a1P11087 Gm13965-201ENSMUST00000154834 576 ntTSL 3 BASIC13.54□□□□□ -0.24
Col1a1P11087 Pet100-201ENSMUST00000156380 1193 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col1a1P11087 Gapdh-ps14-201ENSMUST00000183246 1002 ntBASIC13.54□□□□□ -0.24
Col1a1P11087 Gm43854-201ENSMUST00000200418 394 ntBASIC13.54□□□□□ -0.24
Col1a1P11087 Klk1b15-ps-201ENSMUST00000206273 715 ntBASIC13.54□□□□□ -0.24
Col1a1P11087 Gm5907-202ENSMUST00000210969 661 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Col1a1P11087 Gm40761-201ENSMUST00000219123 1153 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Col1a1P11087 Olfr71-201ENSMUST00000055401 939 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Col1a1P11087 Palld-203ENSMUST00000121493 5445 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Col1a1P11087 Ppara-203ENSMUST00000109423 2519 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col1a1P11087 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Col1a1P11087 Gm11033-201ENSMUST00000127757 1445 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Col1a1P11087 Ap5s1-201ENSMUST00000089506 1432 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Col1a1P11087 Gm45012-201ENSMUST00000208323 1666 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Col1a1P11087 Gm27194-201ENSMUST00000175753 2936 ntBASIC13.53□□□□□ -0.24
Col1a1P11087 CT009757.3-201ENSMUST00000223367 2320 ntBASIC13.53□□□□□ -0.24
Col1a1P11087 4921524J17Rik-201ENSMUST00000047749 1587 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col1a1P11087 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC13.53□□□□□ -0.24
Col1a1P11087 Rnf182-201ENSMUST00000059986 3544 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col1a1P11087 Trpm4-209ENSMUST00000211743 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col1a1P11087 Osbp2-203ENSMUST00000102950 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col1a1P11087 Gm9915-201ENSMUST00000066196 1383 ntBASIC13.53□□□□□ -0.24
Col1a1P11087 Hspa4l-201ENSMUST00000108086 2744 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Col1a1P11087 Gm23745-201ENSMUST00000104230 125 ntBASIC13.53□□□□□ -0.24
Col1a1P11087 Polr2j-203ENSMUST00000111129 474 ntTSL 3 BASIC13.53□□□□□ -0.24
Col1a1P11087 Gm11700-201ENSMUST00000119409 403 ntBASIC13.53□□□□□ -0.24
Col1a1P11087 Gm13204-201ENSMUST00000120110 821 ntBASIC13.53□□□□□ -0.24
Col1a1P11087 Cfap100-204ENSMUST00000134224 849 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Col1a1P11087 H2-M2-202ENSMUST00000171139 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col1a1P11087 Gm21964-201ENSMUST00000178785 936 ntTSL 5 BASIC13.53□□□□□ -0.24
Col1a1P11087 Gm27390-201ENSMUST00000184516 176 ntBASIC13.53□□□□□ -0.24
Col1a1P11087 Gm6606-201ENSMUST00000193613 947 ntBASIC13.53□□□□□ -0.24
Col1a1P11087 Gm31274-201ENSMUST00000197356 229 ntBASIC13.53□□□□□ -0.24
Col1a1P11087 Gm7939-201ENSMUST00000201233 1050 ntBASIC13.53□□□□□ -0.24
Col1a1P11087 BC080696-201ENSMUST00000202858 1218 ntBASIC13.53□□□□□ -0.24
Col1a1P11087 Gm6653-201ENSMUST00000218063 1288 ntBASIC13.53□□□□□ -0.24
Col1a1P11087 Gm9102-201ENSMUST00000219250 465 ntBASIC13.53□□□□□ -0.24
Col1a1P11087 Gm5178-201ENSMUST00000219380 898 ntBASIC13.53□□□□□ -0.24
Col1a1P11087 Iqcf1-201ENSMUST00000085114 613 ntAPPRIS P4 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col1a1P11087 AC138329.2-201ENSMUST00000225579 1842 ntBASIC13.53□□□□□ -0.24
Col1a1P11087 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC13.53□□□□□ -0.24
Col1a1P11087 Usp14-201ENSMUST00000092096 2360 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col1a1P11087 Pogk-202ENSMUST00000128861 4848 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col1a1P11087 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col1a1P11087 Gjb2-201ENSMUST00000055698 2406 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col1a1P11087 BC048403-201ENSMUST00000065600 3123 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col1a1P11087 Axin2-201ENSMUST00000052915 4260 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Col1a1P11087 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Col1a1P11087 Gm7841-201ENSMUST00000122108 1629 ntBASIC13.52□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 62 ms