Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Camk1d-201ENSMUST00000044009 6962 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Slc6a9-209ENSMUST00000163288 2107 ntTSL 5 BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 BC052040-203ENSMUST00000166472 2770 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Chrng-201ENSMUST00000027470 2780 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Rab14-202ENSMUST00000113025 4346 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 AC167669.2-201ENSMUST00000224417 1620 ntBASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Hormad1-201ENSMUST00000029754 1385 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Rbl2-210ENSMUST00000211136 4504 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Bzw1-201ENSMUST00000050552 3876 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Mfsd13b-205ENSMUST00000216241 1761 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Mknk1-202ENSMUST00000106513 2552 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Ghsr-201ENSMUST00000057186 4433 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Megf8-201ENSMUST00000128119 10040 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Sparc-201ENSMUST00000018737 2300 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 C2cd5-213ENSMUST00000204655 3526 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Rps6kl1-202ENSMUST00000221972 2881 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Sp100-213ENSMUST00000155094 1666 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Rnh1-202ENSMUST00000167493 1656 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Rnh1-204ENSMUST00000210314 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Gm25214-201ENSMUST00000104573 129 ntBASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Gm13297-201ENSMUST00000120205 934 ntBASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Olfr1397-ps1-201ENSMUST00000121388 962 ntBASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Tmsb15l-201ENSMUST00000127404 816 ntAPPRIS P1 TSL 2 BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Gm5637-201ENSMUST00000153890 1119 ntBASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Gm12718-202ENSMUST00000156144 660 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Mtmr2-209ENSMUST00000156801 617 ntTSL 5 BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Cox16-204ENSMUST00000166723 579 ntTSL 2 BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Gm27516-201ENSMUST00000184237 98 ntBASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Gm28638-201ENSMUST00000188152 288 ntTSL 5 BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 1700031P21Rik-203ENSMUST00000191400 466 ntTSL 3 BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Gm37612-201ENSMUST00000193626 582 ntTSL 5 BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Gm42937-201ENSMUST00000197360 752 ntBASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Gm19710-201ENSMUST00000200257 640 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Gm43630-201ENSMUST00000201550 776 ntBASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Olfr1233-203ENSMUST00000215469 1205 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 AC156801.1-201ENSMUST00000216158 493 ntTSL 5 BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 AC153974.2-201ENSMUST00000218577 1025 ntBASIC11.06□□□□□ -0.64
Trim39Q9ESN2 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 AC125539.1-202ENSMUST00000226449 670 ntBASIC11.06□□□□□ -0.64
Trim39Q9ESN2 AC126253.1-202ENSMUST00000226732 835 ntBASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 1700028J19Rik-201ENSMUST00000037220 1245 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Ggact-201ENSMUST00000038075 1076 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Dnal4-202ENSMUST00000069877 1011 ntTSL 5 BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Lamb1-205ENSMUST00000169088 5557 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Tmcc3-204ENSMUST00000121471 2614 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Unk-201ENSMUST00000021116 3735 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Anapc4-201ENSMUST00000031072 3854 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Pnpla6-201ENSMUST00000004681 4438 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Prdm16-203ENSMUST00000097759 8544 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Exosc10-202ENSMUST00000076022 2682 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Nrd1-203ENSMUST00000106644 3784 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Gm10829-201ENSMUST00000202084 2988 ntBASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Leprot-201ENSMUST00000030254 1898 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Sgf29-201ENSMUST00000032956 1312 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Kalrn-206ENSMUST00000114954 4677 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Sass6-204ENSMUST00000197335 2458 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 Myt1l-201ENSMUST00000021009 5027 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim39Q9ESN2 C2-201ENSMUST00000025230 2641 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim39Q9ESN2 Ctnnd1-204ENSMUST00000099941 5783 ntTSL 5 BASIC11.05□□□□□ -0.64
Trim39Q9ESN2 Bpnt1-201ENSMUST00000027916 2200 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim39Q9ESN2 Lbr-201ENSMUST00000005003 3510 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim39Q9ESN2 Pigo-201ENSMUST00000067481 3525 ntAPPRIS ALT2 TSL 5 BASIC11.05□□□□□ -0.64
Trim39Q9ESN2 Svopl-202ENSMUST00000096040 2366 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim39Q9ESN2 Cep76-201ENSMUST00000097542 3979 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim39Q9ESN2 Lgr5-206ENSMUST00000172806 2652 ntTSL 5 BASIC11.05□□□□□ -0.64
Trim39Q9ESN2 Sash3-201ENSMUST00000033427 2677 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim39Q9ESN2 Dram1-201ENSMUST00000020249 2807 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim39Q9ESN2 Irak4-201ENSMUST00000074936 2831 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim39Q9ESN2 Lrrc18-204ENSMUST00000120951 1511 ntAPPRIS ALT2 TSL 5 BASIC11.05□□□□□ -0.64
Trim39Q9ESN2 Cyp2t4-202ENSMUST00000164093 1512 ntAPPRIS P2 TSL 5 BASIC11.05□□□□□ -0.64
Trim39Q9ESN2 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim39Q9ESN2 Smndc1-201ENSMUST00000025997 2125 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim39Q9ESN2 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim39Q9ESN2 Myh13-201ENSMUST00000081911 5817 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
Trim39Q9ESN2 Zfand2a-201ENSMUST00000079996 3169 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim39Q9ESN2 Rnf170-201ENSMUST00000014022 3929 ntAPPRIS P2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim39Q9ESN2 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
Trim39Q9ESN2 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
Trim39Q9ESN2 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
Trim39Q9ESN2 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
Trim39Q9ESN2 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
Trim39Q9ESN2 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
Trim39Q9ESN2 Gm12241-201ENSMUST00000118330 726 ntBASIC11.05□□□□□ -0.64
Trim39Q9ESN2 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Trim39Q9ESN2 Gm15579-201ENSMUST00000141299 757 ntTSL 3 BASIC11.05□□□□□ -0.64
Trim39Q9ESN2 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC11.05□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 51.7 ms