Protein–RNA interactions for Protein: Q99JW4

Lims1, LIM and senescent cell antigen-like-containing domain protein 1, mousemouse

Predictions only

Length 325 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lims1Q99JW4 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Lims1Q99JW4 Rhox7-ps1-201ENSMUST00000117595 806 ntBASIC10.67□□□□□ -0.7
Lims1Q99JW4 Gm11930-201ENSMUST00000117788 190 ntBASIC10.67□□□□□ -0.7
Lims1Q99JW4 Gm12241-201ENSMUST00000118330 726 ntBASIC10.67□□□□□ -0.7
Lims1Q99JW4 Gm14726-201ENSMUST00000120623 896 ntBASIC10.67□□□□□ -0.7
Lims1Q99JW4 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC10.67□□□□□ -0.7
Lims1Q99JW4 Kdm4dl-201ENSMUST00000184843 1187 ntBASIC10.67□□□□□ -0.7
Lims1Q99JW4 Mir8093-201ENSMUST00000185043 137 ntBASIC10.67□□□□□ -0.7
Lims1Q99JW4 Gm29164-201ENSMUST00000185454 1024 ntBASIC10.67□□□□□ -0.7
Lims1Q99JW4 Gm34767-201ENSMUST00000191813 1062 ntBASIC10.67□□□□□ -0.7
Lims1Q99JW4 Gm6621-201ENSMUST00000193251 772 ntBASIC10.67□□□□□ -0.7
Lims1Q99JW4 S100a3-205ENSMUST00000200508 587 ntAPPRIS P1 TSL 3 BASIC10.67□□□□□ -0.7
Lims1Q99JW4 Gm36355-201ENSMUST00000203752 639 ntTSL 3 BASIC10.67□□□□□ -0.7
Lims1Q99JW4 Olfr1380-201ENSMUST00000204300 938 ntAPPRIS P1 BASIC10.67□□□□□ -0.7
Lims1Q99JW4 Ssr4-201ENSMUST00000002090 765 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
Lims1Q99JW4 Gm45598-202ENSMUST00000210719 986 ntBASIC10.67□□□□□ -0.7
Lims1Q99JW4 Caly-204ENSMUST00000211283 975 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Lims1Q99JW4 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
Lims1Q99JW4 Ifi27-201ENSMUST00000066701 889 ntAPPRIS P4 TSL 1 (best) BASIC10.67□□□□□ -0.7
Lims1Q99JW4 Rpl35a-201ENSMUST00000078804 491 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Lims1Q99JW4 1700007G11Rik-201ENSMUST00000080333 861 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Lims1Q99JW4 Cox5a-201ENSMUST00000000090 645 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Lims1Q99JW4 Lyz1-201ENSMUST00000092162 1263 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Lims1Q99JW4 Neu2-206ENSMUST00000166259 1596 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
Lims1Q99JW4 Phkg2-201ENSMUST00000033086 1570 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Lims1Q99JW4 Rapgef2-201ENSMUST00000118100 6573 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Lims1Q99JW4 Pitpnm3-201ENSMUST00000075258 6555 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
Lims1Q99JW4 Myo10-202ENSMUST00000110457 8125 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Lims1Q99JW4 Acrbp-202ENSMUST00000088294 1883 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
Lims1Q99JW4 Rxfp2-206ENSMUST00000201612 2470 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Lims1Q99JW4 Mab21l1-201ENSMUST00000075422 2492 ntAPPRIS P1 BASIC10.67□□□□□ -0.7
Lims1Q99JW4 Zc3h18-205ENSMUST00000176629 3672 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Lims1Q99JW4 Wars-204ENSMUST00000161154 1824 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Lims1Q99JW4 Arhgef9-201ENSMUST00000113873 2117 ntTSL 5 BASIC10.67□□□□□ -0.7
Lims1Q99JW4 Fbxl12os-203ENSMUST00000138471 2127 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Lims1Q99JW4 Traf3ip3-201ENSMUST00000043550 2122 ntAPPRIS P2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Lims1Q99JW4 Grin1-208ENSMUST00000114318 3920 ntTSL 5 BASIC10.67□□□□□ -0.7
Lims1Q99JW4 Grin1-206ENSMUST00000114314 3882 ntTSL 5 BASIC10.67□□□□□ -0.7
Lims1Q99JW4 Exoc4-203ENSMUST00000115080 2369 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Lims1Q99JW4 Nxpe5-204ENSMUST00000161047 2379 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Lims1Q99JW4 Gm15958-202ENSMUST00000153479 2087 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Lims1Q99JW4 AU015791-201ENSMUST00000223443 1457 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Lims1Q99JW4 Cttn-201ENSMUST00000033407 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Lims1Q99JW4 Zfp612-201ENSMUST00000058804 3180 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Lims1Q99JW4 Tfdp1-201ENSMUST00000170909 1700 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
Lims1Q99JW4 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Lims1Q99JW4 Vamp1-202ENSMUST00000063588 1400 ntTSL 2 BASIC10.67□□□□□ -0.7
Lims1Q99JW4 Ankrd33-201ENSMUST00000070875 1442 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Lims1Q99JW4 Gm13684-201ENSMUST00000152569 2264 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Lims1Q99JW4 Wdr59-202ENSMUST00000038193 5083 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Lims1Q99JW4 Htr1f-201ENSMUST00000063076 2509 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Lims1Q99JW4 4930432E11Rik-202ENSMUST00000063585 10871 ntBASIC10.66□□□□□ -0.7
Lims1Q99JW4 Igf1-207ENSMUST00000122386 1391 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Lims1Q99JW4 Gm20425-201ENSMUST00000166836 3028 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
Lims1Q99JW4 Tas1r2-201ENSMUST00000030510 3047 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Lims1Q99JW4 Per1-202ENSMUST00000101004 3507 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Lims1Q99JW4 C130050O18Rik-202ENSMUST00000163940 1618 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Lims1Q99JW4 Hspa4l-208ENSMUST00000204702 9479 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Lims1Q99JW4 Gm29358-202ENSMUST00000187941 3227 ntBASIC10.66□□□□□ -0.7
Lims1Q99JW4 Pck1-201ENSMUST00000029017 2661 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Lims1Q99JW4 Alg12-204ENSMUST00000162183 2130 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Lims1Q99JW4 Lmo3-206ENSMUST00000163024 1331 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Lims1Q99JW4 Trpv3-201ENSMUST00000049676 5835 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Lims1Q99JW4 Esr1-204ENSMUST00000105590 6339 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Lims1Q99JW4 Snap29-201ENSMUST00000023449 3429 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Lims1Q99JW4 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Lims1Q99JW4 Tagln2-202ENSMUST00000111230 1586 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Lims1Q99JW4 4930563E18Rik-201ENSMUST00000180948 1553 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Lims1Q99JW4 Pacsin1-201ENSMUST00000045896 4190 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Lims1Q99JW4 Gm20755-201ENSMUST00000196893 1827 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Lims1Q99JW4 Ppp1r18-201ENSMUST00000113814 3131 ntAPPRIS P2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Lims1Q99JW4 Best1-201ENSMUST00000117346 2080 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
Lims1Q99JW4 Cntd1-201ENSMUST00000103107 2335 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Lims1Q99JW4 C730027H18Rik-201ENSMUST00000218381 2300 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Lims1Q99JW4 Fermt3-201ENSMUST00000040772 2587 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Lims1Q99JW4 Gm37580-201ENSMUST00000192408 2800 ntBASIC10.66□□□□□ -0.7
Lims1Q99JW4 Kremen1-201ENSMUST00000020662 4856 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Lims1Q99JW4 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
Lims1Q99JW4 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
Lims1Q99JW4 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
Lims1Q99JW4 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
Lims1Q99JW4 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
Lims1Q99JW4 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
Lims1Q99JW4 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
Lims1Q99JW4 Gm11500-201ENSMUST00000118237 601 ntBASIC10.66□□□□□ -0.7
Lims1Q99JW4 Dixdc1-204ENSMUST00000118707 989 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Lims1Q99JW4 Rpl3-ps1-201ENSMUST00000120557 1210 ntBASIC10.66□□□□□ -0.7
Lims1Q99JW4 Mrps17-207ENSMUST00000121813 868 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Lims1Q99JW4 Tmbim6-206ENSMUST00000161250 1148 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
Lims1Q99JW4 Gm17099-201ENSMUST00000166780 412 ntTSL 3 BASIC10.66□□□□□ -0.7
Lims1Q99JW4 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC10.66□□□□□ -0.7
Lims1Q99JW4 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Lims1Q99JW4 9330159M07Rik-202ENSMUST00000180783 1044 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Lims1Q99JW4 Gm4857-201ENSMUST00000192718 785 ntBASIC10.66□□□□□ -0.7
Lims1Q99JW4 Gm31256-201ENSMUST00000194705 506 ntBASIC10.66□□□□□ -0.7
Lims1Q99JW4 Gm5982-201ENSMUST00000196234 512 ntBASIC10.66□□□□□ -0.7
Lims1Q99JW4 4930477O15Rik-201ENSMUST00000196484 1089 ntBASIC10.66□□□□□ -0.7
Lims1Q99JW4 Hax1-205ENSMUST00000197767 1092 ntAPPRIS ALT2 TSL 5 BASIC10.66□□□□□ -0.7
Lims1Q99JW4 Gm43371-201ENSMUST00000202838 1031 ntBASIC10.66□□□□□ -0.7
Lims1Q99JW4 Gm21769-201ENSMUST00000211922 111 ntBASIC10.66□□□□□ -0.7
Retrieved 100 of 76,532 protein–RNA pairs in 50.6 ms