Protein–RNA interactions for Protein: Q91VN6

Ddx41, Probable ATP-dependent RNA helicase DDX41, mousemouse

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx41Q91VN6 Gm2965-201ENSMUST00000198365 343 ntBASIC13.49□□□□□ -0.25
Ddx41Q91VN6 Strip2-205ENSMUST00000151738 5281 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Ddx41Q91VN6 5031434O11Rik-201ENSMUST00000180404 3731 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Ddx41Q91VN6 Cog4-201ENSMUST00000034203 2737 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Ddx41Q91VN6 Tut1-201ENSMUST00000096239 2747 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
Ddx41Q91VN6 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
Ddx41Q91VN6 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Ddx41Q91VN6 Kdm2b-202ENSMUST00000046073 5180 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Ddx41Q91VN6 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Ddx41Q91VN6 Usp3-205ENSMUST00000127569 5607 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Ddx41Q91VN6 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Ddx41Q91VN6 Rbm8a-202ENSMUST00000196456 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Ddx41Q91VN6 Rbm8a-206ENSMUST00000200647 2620 ntTSL 2 BASIC13.49□□□□□ -0.25
Ddx41Q91VN6 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Ddx41Q91VN6 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Ddx41Q91VN6 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Ddx41Q91VN6 Ptprm-203ENSMUST00000224091 3773 ntBASIC13.49□□□□□ -0.25
Ddx41Q91VN6 Rps6kl1-202ENSMUST00000221972 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Ddx41Q91VN6 Mark3-208ENSMUST00000221753 2394 ntTSL 5 BASIC13.49□□□□□ -0.25
Ddx41Q91VN6 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
Ddx41Q91VN6 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
Ddx41Q91VN6 Col14a1-201ENSMUST00000023053 6457 ntAPPRIS ALT1 TSL 5 BASIC13.48□□□□□ -0.25
Ddx41Q91VN6 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Ddx41Q91VN6 C2-201ENSMUST00000025230 2641 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Ddx41Q91VN6 Gatad2a-201ENSMUST00000065169 3812 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Ddx41Q91VN6 Gm26510-201ENSMUST00000180468 1796 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Ddx41Q91VN6 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
Ddx41Q91VN6 Mzf1-201ENSMUST00000069289 3597 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Ddx41Q91VN6 Fbxo18-201ENSMUST00000071564 3567 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Ddx41Q91VN6 Tln1-201ENSMUST00000030187 8393 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Ddx41Q91VN6 Parp9-203ENSMUST00000114878 3548 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Ddx41Q91VN6 Myo18a-220ENSMUST00000164334 5381 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
Ddx41Q91VN6 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Ddx41Q91VN6 Tonsl-207ENSMUST00000168185 4235 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Ddx41Q91VN6 Gm24891-201ENSMUST00000104391 136 ntBASIC13.48□□□□□ -0.25
Ddx41Q91VN6 S100a16-206ENSMUST00000107335 926 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
Ddx41Q91VN6 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC13.48□□□□□ -0.25
Ddx41Q91VN6 1110038B12Rik-208ENSMUST00000174714 520 ntTSL 2 BASIC13.48□□□□□ -0.25
Ddx41Q91VN6 Gm7467-201ENSMUST00000185173 652 ntBASIC13.48□□□□□ -0.25
Ddx41Q91VN6 Gm3508-201ENSMUST00000186012 792 ntBASIC13.48□□□□□ -0.25
Ddx41Q91VN6 A430027H14Rik-202ENSMUST00000192797 618 ntTSL 2 BASIC13.48□□□□□ -0.25
Ddx41Q91VN6 Gm37835-201ENSMUST00000193305 361 ntBASIC13.48□□□□□ -0.25
Ddx41Q91VN6 Gm8956-201ENSMUST00000203939 825 ntBASIC13.48□□□□□ -0.25
Ddx41Q91VN6 Saa2-202ENSMUST00000210272 511 ntTSL 3 BASIC13.48□□□□□ -0.25
Ddx41Q91VN6 Gm40983-201ENSMUST00000222524 502 ntTSL 3 BASIC13.48□□□□□ -0.25
Ddx41Q91VN6 Atp6v1g1-201ENSMUST00000035301 1135 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Ddx41Q91VN6 Ank2-221ENSMUST00000182994 2715 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Ddx41Q91VN6 AC130671.2-201ENSMUST00000227224 1621 ntBASIC13.48□□□□□ -0.25
Ddx41Q91VN6 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC13.48□□□□□ -0.25
Ddx41Q91VN6 Ces2a-201ENSMUST00000034346 1960 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Ddx41Q91VN6 Lsp1-211ENSMUST00000149521 1910 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Ddx41Q91VN6 Sema4c-208ENSMUST00000195620 3640 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Ddx41Q91VN6 Map3k4-201ENSMUST00000089058 5305 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Ddx41Q91VN6 Kdm5b-201ENSMUST00000047714 8714 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Ddx41Q91VN6 Cbfa2t2-202ENSMUST00000099178 3247 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Ddx41Q91VN6 Zc3hc1-203ENSMUST00000115184 1504 ntTSL 5 BASIC13.48□□□□□ -0.25
Ddx41Q91VN6 Fam172a-201ENSMUST00000091459 3892 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Ddx41Q91VN6 Etaa1-201ENSMUST00000076661 4185 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Ddx41Q91VN6 Zfp809-206ENSMUST00000215902 1800 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Ddx41Q91VN6 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
Ddx41Q91VN6 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
Ddx41Q91VN6 Cdc7-201ENSMUST00000031221 2961 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx41Q91VN6 Sh3tc1-201ENSMUST00000070203 4549 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx41Q91VN6 Rgs11-201ENSMUST00000025020 2006 ntAPPRIS P2 TSL 2 BASIC13.47□□□□□ -0.25
Ddx41Q91VN6 Il1rap-206ENSMUST00000174202 2306 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx41Q91VN6 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx41Q91VN6 Hoxa9-201ENSMUST00000048680 3226 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx41Q91VN6 5330439B14Rik-201ENSMUST00000194811 1392 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx41Q91VN6 Trmt61b-202ENSMUST00000137830 2572 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx41Q91VN6 Efna1-202ENSMUST00000118587 1632 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx41Q91VN6 Atp6v0a1-210ENSMUST00000168757 3967 ntAPPRIS ALT1 TSL 5 BASIC13.47□□□□□ -0.25
Ddx41Q91VN6 Bahcc1-202ENSMUST00000118987 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx41Q91VN6 Mrps17-206ENSMUST00000121339 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx41Q91VN6 Sorbs1-203ENSMUST00000165212 2175 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
Ddx41Q91VN6 Ntng2-202ENSMUST00000071201 1881 ntTSL 5 BASIC13.47□□□□□ -0.25
Ddx41Q91VN6 Pcnx3-202ENSMUST00000113615 7264 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx41Q91VN6 Ifitm10-203ENSMUST00000105988 824 ntAPPRIS P4 TSL 2 BASIC13.47□□□□□ -0.25
Ddx41Q91VN6 Cd27-203ENSMUST00000112282 588 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx41Q91VN6 Gm8566-201ENSMUST00000120174 465 ntBASIC13.47□□□□□ -0.25
Ddx41Q91VN6 Gm42599-201ENSMUST00000201308 469 ntBASIC13.47□□□□□ -0.25
Ddx41Q91VN6 Slc37a4-207ENSMUST00000215420 2128 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx41Q91VN6 Gm9797-202ENSMUST00000218003 294 ntBASIC13.47□□□□□ -0.25
Ddx41Q91VN6 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx41Q91VN6 Gfm1-201ENSMUST00000077271 4078 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx41Q91VN6 Cln3-201ENSMUST00000032962 2386 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx41Q91VN6 AC160405.1-201ENSMUST00000218207 1545 ntBASIC13.47□□□□□ -0.25
Ddx41Q91VN6 Pogk-202ENSMUST00000128861 4848 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx41Q91VN6 Prkag3-201ENSMUST00000081636 2341 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx41Q91VN6 Slc25a13-203ENSMUST00000188414 3121 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx41Q91VN6 Pif1-203ENSMUST00000134538 3395 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx41Q91VN6 Hhipl2-201ENSMUST00000065900 2525 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Ddx41Q91VN6 Knop1-206ENSMUST00000126792 3253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx41Q91VN6 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC13.47□□□□□ -0.25
Ddx41Q91VN6 Otub2-202ENSMUST00000101094 3228 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx41Q91VN6 Zfp61-208ENSMUST00000165241 1668 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Ddx41Q91VN6 Extl3-203ENSMUST00000225633 6013 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
Ddx41Q91VN6 Alx1-203ENSMUST00000167156 2689 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Ddx41Q91VN6 Uimc1-201ENSMUST00000026997 2931 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Ddx41Q91VN6 Gm2238-201ENSMUST00000192074 3669 ntBASIC13.46□□□□□ -0.25
Ddx41Q91VN6 Fam227a-202ENSMUST00000109646 1896 ntTSL 5 BASIC13.46□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 53 ms