Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Trim11-202ENSMUST00000108809 3522 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Lrrc36-201ENSMUST00000067305 2082 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Maged2-202ENSMUST00000112697 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Apbb2-216ENSMUST00000162366 6540 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Bnip3l-ps-201ENSMUST00000101577 657 ntBASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Cstl1-202ENSMUST00000109954 454 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Acsl1-202ENSMUST00000110371 2100 ntTSL 5 BASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Fen1-202ENSMUST00000116542 2100 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Gm12616-201ENSMUST00000118594 382 ntBASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Gm6039-201ENSMUST00000121667 1250 ntBASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Bcas3os2-201ENSMUST00000134305 661 ntTSL 5 BASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Gm12624-201ENSMUST00000177615 382 ntBASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Gm12621-201ENSMUST00000177760 382 ntBASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Gm12615-201ENSMUST00000177970 382 ntBASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Gm12622-201ENSMUST00000177975 382 ntBASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Gm12627-201ENSMUST00000178412 382 ntBASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Gm12625-201ENSMUST00000179122 382 ntBASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Gm12614-201ENSMUST00000179586 382 ntBASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Gm12613-201ENSMUST00000180323 382 ntBASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Gm9211-201ENSMUST00000182882 975 ntBASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Gm43584-201ENSMUST00000199762 605 ntTSL 3 BASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Gm44968-201ENSMUST00000207652 1171 ntTSL 5 BASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Gm7207-201ENSMUST00000211575 1067 ntBASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Trappc4-206ENSMUST00000217163 1185 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Bnip3l-ps-202ENSMUST00000220709 1132 ntBASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Smndc1-201ENSMUST00000025997 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Cga-201ENSMUST00000029975 687 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Zfp957-202ENSMUST00000161649 2751 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Lsamp-208ENSMUST00000189358 2766 ntTSL 5 BASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Grin1-206ENSMUST00000114314 3882 ntTSL 5 BASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Gm43773-201ENSMUST00000198548 2162 ntBASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Borcs7-201ENSMUST00000074912 2176 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Nup88Q8CEC0 St6galnac5-201ENSMUST00000044278 5667 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Wdr17-211ENSMUST00000175915 4619 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Rnf133-201ENSMUST00000063548 1308 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Usp22-201ENSMUST00000041683 4434 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Foxk1-201ENSMUST00000072837 7439 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Asap1-203ENSMUST00000110115 4535 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Eps8l2-201ENSMUST00000026577 3191 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Zfp597-201ENSMUST00000090522 5668 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Ldhd-201ENSMUST00000070004 2273 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Nup88Q8CEC0 L1td1-204ENSMUST00000173659 2547 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Rbm10-207ENSMUST00000177738 2790 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
Nup88Q8CEC0 Gm21319-201ENSMUST00000164517 1863 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Nup88Q8CEC0 Slc46a2-201ENSMUST00000030081 2833 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Nup88Q8CEC0 Smtn-202ENSMUST00000020721 3335 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Nup88Q8CEC0 Stim1-209ENSMUST00000211457 2183 ntTSL 5 BASIC13.82□□□□□ -0.2
Nup88Q8CEC0 Aicda-201ENSMUST00000043301 2405 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Nup88Q8CEC0 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC13.82□□□□□ -0.2
Nup88Q8CEC0 Nras-201ENSMUST00000029445 4470 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Nup88Q8CEC0 Ambra1-203ENSMUST00000099712 5021 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Nup88Q8CEC0 Sema3g-201ENSMUST00000090180 4540 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Nup88Q8CEC0 Fosb-201ENSMUST00000003640 3782 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Nup88Q8CEC0 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Nup88Q8CEC0 Ccl27a-203ENSMUST00000108033 428 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Nup88Q8CEC0 Mdk-ps1-201ENSMUST00000119782 321 ntBASIC13.82□□□□□ -0.2
Nup88Q8CEC0 Gm13133-201ENSMUST00000143888 736 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Nup88Q8CEC0 Gm12395-201ENSMUST00000144765 536 ntTSL 5 BASIC13.82□□□□□ -0.2
Nup88Q8CEC0 Tmem116-209ENSMUST00000156080 1184 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Nup88Q8CEC0 Mir1943-201ENSMUST00000158276 73 ntBASIC13.82□□□□□ -0.2
Nup88Q8CEC0 Gm9550-201ENSMUST00000161130 862 ntBASIC13.82□□□□□ -0.2
Nup88Q8CEC0 Snrpa-206ENSMUST00000163311 1288 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
Nup88Q8CEC0 Rbakdn-201ENSMUST00000198334 520 ntTSL 2 BASIC13.82□□□□□ -0.2
Nup88Q8CEC0 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Nup88Q8CEC0 Gm10109-202ENSMUST00000206890 1211 ntBASIC13.82□□□□□ -0.2
Nup88Q8CEC0 5330413P13Rik-205ENSMUST00000210961 913 ntTSL 5 BASIC13.82□□□□□ -0.2
Nup88Q8CEC0 1700028J19Rik-201ENSMUST00000037220 1245 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Nup88Q8CEC0 Fam92b-201ENSMUST00000048786 1187 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Nup88Q8CEC0 Gm10109-201ENSMUST00000072123 1078 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Nup88Q8CEC0 Gm37131-201ENSMUST00000192502 1561 ntBASIC13.82□□□□□ -0.2
Nup88Q8CEC0 Helq-201ENSMUST00000044684 3689 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Nup88Q8CEC0 Gtf3c4-201ENSMUST00000037117 6941 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Nup88Q8CEC0 Aff3-202ENSMUST00000039827 6010 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Nup88Q8CEC0 Gm18782-201ENSMUST00000209023 1399 ntBASIC13.82□□□□□ -0.2
Nup88Q8CEC0 Tmem168-206ENSMUST00000149123 3337 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Nup88Q8CEC0 Csf1-201ENSMUST00000014743 4176 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Nup88Q8CEC0 Gm44152-201ENSMUST00000205007 1691 ntBASIC13.82□□□□□ -0.2
Nup88Q8CEC0 Cacna1c-203ENSMUST00000112790 7631 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Nup88Q8CEC0 Rps6kl1-202ENSMUST00000221972 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Nup88Q8CEC0 Crispld2-201ENSMUST00000034282 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Nup88Q8CEC0 Zmynd8-203ENSMUST00000099084 5232 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Nup88Q8CEC0 Zfp862-ps-201ENSMUST00000203457 3282 ntBASIC13.81□□□□□ -0.2
Nup88Q8CEC0 Tiparp-201ENSMUST00000047906 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Nup88Q8CEC0 Cbx7-201ENSMUST00000089293 3388 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Nup88Q8CEC0 Col9a1-202ENSMUST00000088349 3059 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Nup88Q8CEC0 Rtp4-202ENSMUST00000209422 1859 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Nup88Q8CEC0 Gm11989-201ENSMUST00000117240 672 ntBASIC13.81□□□□□ -0.2
Nup88Q8CEC0 Rpl36-ps10-201ENSMUST00000117431 216 ntBASIC13.81□□□□□ -0.2
Nup88Q8CEC0 Gm13611-201ENSMUST00000118269 318 ntBASIC13.81□□□□□ -0.2
Nup88Q8CEC0 Gm11362-201ENSMUST00000118838 850 ntBASIC13.81□□□□□ -0.2
Nup88Q8CEC0 1700003G13Rik-202ENSMUST00000131342 705 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Nup88Q8CEC0 Gm7568-202ENSMUST00000160446 709 ntTSL 3 BASIC13.81□□□□□ -0.2
Nup88Q8CEC0 1810008B01Rik-201ENSMUST00000162325 829 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Nup88Q8CEC0 Rpl19-201ENSMUST00000017548 751 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Nup88Q8CEC0 Gm37835-201ENSMUST00000193305 361 ntBASIC13.81□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 545.4 ms