Protein–RNA interactions for Protein: Q8C9S8

Atg4a, Cysteine protease ATG4A, mousemouse

Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Atg4aQ8C9S8 Tnn-202ENSMUST00000131919 3987 ntTSL 5 BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Sv2b-202ENSMUST00000165175 5524 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Galnt10-201ENSMUST00000066987 4715 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Rnf123-218ENSMUST00000178267 4309 ntAPPRIS P3 TSL 5 BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Gtf2ird1-207ENSMUST00000111245 3299 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Zc3h4-202ENSMUST00000209289 5853 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Jrk-201ENSMUST00000050234 5853 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Dph7-201ENSMUST00000028351 1666 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Gfra1-201ENSMUST00000026076 4641 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Onecut1-201ENSMUST00000056006 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Ackr3-201ENSMUST00000065587 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Spag16-202ENSMUST00000113940 3559 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 BC017643-201ENSMUST00000038709 2417 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Gsg1-202ENSMUST00000111909 1087 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Gm13809-201ENSMUST00000117921 597 ntBASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Inca1-205ENSMUST00000126114 1189 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 C230038L03Rik-202ENSMUST00000136294 1197 ntTSL 2 BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 E130307A14Rik-204ENSMUST00000139356 701 ntTSL 3 BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Gm6397-201ENSMUST00000161973 1069 ntBASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Gm29164-201ENSMUST00000185454 1024 ntBASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Gm28982-201ENSMUST00000186895 512 ntTSL 3 BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Gm37835-201ENSMUST00000193305 361 ntBASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Gm37634-201ENSMUST00000195700 650 ntTSL 3 BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Gm21221-201ENSMUST00000202876 1073 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Gm44968-201ENSMUST00000207652 1171 ntTSL 5 BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 AC134860.1-201ENSMUST00000224867 660 ntBASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Immp1l-201ENSMUST00000037499 955 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Inca1-201ENSMUST00000073625 1218 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Gm7551-201ENSMUST00000089593 1074 ntBASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Tnni3-201ENSMUST00000098859 912 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Nme1-203ENSMUST00000135884 3181 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Mdga1-201ENSMUST00000073556 7566 ntAPPRIS P2 TSL 5 BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Map7d2-202ENSMUST00000112470 1350 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Smndc1-201ENSMUST00000025997 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Muc3-201ENSMUST00000041226 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Grm4-202ENSMUST00000118489 2976 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Chml-201ENSMUST00000104984 6905 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Chml-202ENSMUST00000209720 6905 ntTSL 5 BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Spast-201ENSMUST00000024869 4672 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Mtmr3-201ENSMUST00000040448 5534 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 Celsr1-201ENSMUST00000016172 10879 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Atg4aQ8C9S8 0610037L13Rik-207ENSMUST00000125107 1551 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 Gm14685-202ENSMUST00000179117 2773 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 1600014C10Rik-201ENSMUST00000067854 3143 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 Nrde2-201ENSMUST00000021596 3718 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 Acad8-201ENSMUST00000060513 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 Mfsd14b-203ENSMUST00000155487 3832 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 Mfap3l-202ENSMUST00000160719 6335 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 Slc6a16-201ENSMUST00000179310 2007 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 Gm44190-201ENSMUST00000205083 1401 ntBASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 Cln3-201ENSMUST00000032962 2386 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 Aff4-201ENSMUST00000060945 10099 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 Aldh3b2-201ENSMUST00000143380 2141 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 Maip1-201ENSMUST00000027114 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 Ttll10-206ENSMUST00000184348 2556 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 Olfr1344-202ENSMUST00000218906 2590 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 Gm10681-202ENSMUST00000178221 1605 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 Gngt2-207ENSMUST00000107714 558 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 Arvcf-202ENSMUST00000115610 3829 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 Gm7150-201ENSMUST00000122032 981 ntBASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 Zdhhc4-208ENSMUST00000161915 1216 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 Eloc-207ENSMUST00000187910 620 ntTSL 2 BASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 Ntng1-201ENSMUST00000051253 327 ntBASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 Aplp2-209ENSMUST00000217641 3462 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 Dpysl4-201ENSMUST00000026551 3552 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 Ctnnal1-201ENSMUST00000045142 3664 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 Gm29050-201ENSMUST00000190732 2528 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 Gm6903-201ENSMUST00000160509 1366 ntBASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 Gm7964-201ENSMUST00000051522 1378 ntBASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 Wt1os-203ENSMUST00000172701 2960 ntTSL 2 BASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 Cd40-201ENSMUST00000017799 2986 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 Akap10-203ENSMUST00000108710 3394 ntTSL 2 BASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 Nfasc-203ENSMUST00000163770 3903 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 E2f7-201ENSMUST00000073781 5473 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 Drd1-202ENSMUST00000221470 3576 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 9530077C05Rik-201ENSMUST00000058868 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 Ubxn10-201ENSMUST00000105809 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 Mcam-202ENSMUST00000098852 2772 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 Btnl4-201ENSMUST00000065841 1761 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Atg4aQ8C9S8 Arhgap27-204ENSMUST00000107024 3976 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Atg4aQ8C9S8 AC154537.1-201ENSMUST00000226101 1304 ntBASIC14.16□□□□□ -0.14
Atg4aQ8C9S8 Slc6a12-205ENSMUST00000166457 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Atg4aQ8C9S8 Cd72-205ENSMUST00000107926 1419 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Atg4aQ8C9S8 Cd72-203ENSMUST00000098105 1420 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Atg4aQ8C9S8 Sstr3-201ENSMUST00000053239 3928 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Atg4aQ8C9S8 Gm807-201ENSMUST00000181742 1723 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Atg4aQ8C9S8 Platr25-207ENSMUST00000222477 1705 ntTSL 5 BASIC14.16□□□□□ -0.14
Atg4aQ8C9S8 Zfp558-202ENSMUST00000034647 1701 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Atg4aQ8C9S8 Pde4c-201ENSMUST00000034307 3203 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Atg4aQ8C9S8 Serhl-205ENSMUST00000166427 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Atg4aQ8C9S8 Lgals12-201ENSMUST00000079902 2590 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Atg4aQ8C9S8 Zfp689-201ENSMUST00000053392 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Atg4aQ8C9S8 Cyp26b1-204ENSMUST00000204146 4495 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Atg4aQ8C9S8 Phyhipl-201ENSMUST00000046513 2877 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Atg4aQ8C9S8 Fam110a-202ENSMUST00000109863 1284 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 53.2 ms