Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Gm9162-201ENSMUST00000182081 991 ntBASIC12.14□□□□□ -0.47
Sox9Q04887 Calm5-202ENSMUST00000184271 423 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sox9Q04887 Gpx1-204ENSMUST00000193987 653 ntTSL 3 BASIC12.14□□□□□ -0.47
Sox9Q04887 Gm34379-201ENSMUST00000195036 290 ntBASIC12.14□□□□□ -0.47
Sox9Q04887 Gm6450-201ENSMUST00000200896 574 ntBASIC12.14□□□□□ -0.47
Sox9Q04887 Gm44511-201ENSMUST00000204394 678 ntAPPRIS P5 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sox9Q04887 Gm44511-202ENSMUST00000204423 678 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sox9Q04887 Akr1c18-201ENSMUST00000021635 1200 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sox9Q04887 AC158392.3-201ENSMUST00000224271 1284 ntBASIC12.14□□□□□ -0.47
Sox9Q04887 Gm26670-202ENSMUST00000226862 340 ntBASIC12.14□□□□□ -0.47
Sox9Q04887 Rpl9-ps6-201ENSMUST00000078034 691 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
Sox9Q04887 Olfr372-201ENSMUST00000093434 1016 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
Sox9Q04887 Sesn3-204ENSMUST00000208222 9125 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sox9Q04887 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sox9Q04887 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sox9Q04887 BC052040-203ENSMUST00000166472 2770 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Sox9Q04887 Olfr742-202ENSMUST00000213935 2117 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Sox9Q04887 Il13ra1-201ENSMUST00000033418 3712 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sox9Q04887 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sox9Q04887 D6Ertd527e-203ENSMUST00000203747 2216 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Sox9Q04887 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Sox9Q04887 Zbtb44-205ENSMUST00000216649 3157 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Sox9Q04887 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sox9Q04887 Tmem138-201ENSMUST00000025568 1590 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sox9Q04887 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sox9Q04887 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sox9Q04887 Asap1-201ENSMUST00000023008 4580 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
Sox9Q04887 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sox9Q04887 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
Sox9Q04887 Aifm2-203ENSMUST00000099706 3086 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sox9Q04887 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sox9Q04887 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sox9Q04887 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Sox9Q04887 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sox9Q04887 Vmn1r65-201ENSMUST00000086338 2682 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sox9Q04887 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Sox9Q04887 Unc119-202ENSMUST00000100755 933 ntTSL 2 BASIC12.13□□□□□ -0.47
Sox9Q04887 Gm5150-201ENSMUST00000108347 913 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sox9Q04887 Tmem91-203ENSMUST00000108405 550 ntTSL 3 BASIC12.13□□□□□ -0.47
Sox9Q04887 Gm14275-201ENSMUST00000152112 430 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Sox9Q04887 Gm26047-201ENSMUST00000157308 113 ntBASIC12.13□□□□□ -0.47
Sox9Q04887 Gm25554-201ENSMUST00000158075 113 ntBASIC12.13□□□□□ -0.47
Sox9Q04887 Gm16030-201ENSMUST00000159098 603 ntBASIC12.13□□□□□ -0.47
Sox9Q04887 Gm37197-201ENSMUST00000195607 401 ntBASIC12.13□□□□□ -0.47
Sox9Q04887 Gm26047-202ENSMUST00000198840 115 ntBASIC12.13□□□□□ -0.47
Sox9Q04887 Ighv1-86-201ENSMUST00000200562 353 ntBASIC12.13□□□□□ -0.47
Sox9Q04887 Cma1-202ENSMUST00000226280 1090 ntAPPRIS ALT2 BASIC12.13□□□□□ -0.47
Sox9Q04887 Cma1-201ENSMUST00000022834 1074 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sox9Q04887 Rhox8-201ENSMUST00000071885 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sox9Q04887 Pcdha2-202ENSMUST00000195590 4645 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sox9Q04887 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC12.13□□□□□ -0.47
Sox9Q04887 Plagl1-202ENSMUST00000121646 5260 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sox9Q04887 Airn-205ENSMUST00000161890 1375 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Sox9Q04887 Tcim-201ENSMUST00000052622 1805 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
Sox9Q04887 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sox9Q04887 Cfap61-201ENSMUST00000116398 1561 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Sox9Q04887 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sox9Q04887 Gm2721-201ENSMUST00000222380 1571 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Sox9Q04887 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sox9Q04887 Paox-201ENSMUST00000026537 4655 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sox9Q04887 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sox9Q04887 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sox9Q04887 Lrfn3-201ENSMUST00000046351 2886 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sox9Q04887 Foxh1-201ENSMUST00000037824 1306 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sox9Q04887 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Sox9Q04887 Mafk-202ENSMUST00000110836 3097 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Sox9Q04887 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC12.12□□□□□ -0.47
Sox9Q04887 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sox9Q04887 Stk32b-201ENSMUST00000094836 3458 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sox9Q04887 Myh13-202ENSMUST00000108684 6062 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Sox9Q04887 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Sox9Q04887 Gm45053-201ENSMUST00000206112 2499 ntBASIC12.12□□□□□ -0.47
Sox9Q04887 Gm25562-201ENSMUST00000104608 133 ntBASIC12.12□□□□□ -0.47
Sox9Q04887 Ifitm1-202ENSMUST00000106040 560 ntAPPRIS P1 TSL 3 BASIC12.12□□□□□ -0.47
Sox9Q04887 Ifitm1-203ENSMUST00000106042 882 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sox9Q04887 Plac8-203ENSMUST00000112910 1224 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
Sox9Q04887 Srpk1-202ENSMUST00000114767 445 ntTSL 3 BASIC12.12□□□□□ -0.47
Sox9Q04887 Olfr1267-ps1-201ENSMUST00000118957 930 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
Sox9Q04887 Gm12756-201ENSMUST00000126294 599 ntTSL 3 BASIC12.12□□□□□ -0.47
Sox9Q04887 Polr3c-205ENSMUST00000141377 808 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Sox9Q04887 Mir6953-201ENSMUST00000184745 68 ntBASIC12.12□□□□□ -0.47
Sox9Q04887 1600010M07Rik-202ENSMUST00000188662 654 ntTSL 2 BASIC12.12□□□□□ -0.47
Sox9Q04887 Nme6-214ENSMUST00000200468 865 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
Sox9Q04887 Apoa5-205ENSMUST00000215187 495 ntTSL 5 BASIC12.12□□□□□ -0.47
Sox9Q04887 AC162932.1-201ENSMUST00000219209 872 ntBASIC12.12□□□□□ -0.47
Sox9Q04887 Adipoq-201ENSMUST00000023593 1292 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sox9Q04887 Ifitm1-201ENSMUST00000026564 736 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sox9Q04887 Gm8181-201ENSMUST00000062242 669 ntBASIC12.12□□□□□ -0.47
Sox9Q04887 Prok2-201ENSMUST00000008273 594 ntTSL 3 BASIC12.12□□□□□ -0.47
Sox9Q04887 Ninl-201ENSMUST00000109896 5093 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Sox9Q04887 1700030J22Rik-202ENSMUST00000213068 1482 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sox9Q04887 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Sox9Q04887 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sox9Q04887 Cldn15-201ENSMUST00000001790 1850 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sox9Q04887 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Sox9Q04887 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sox9Q04887 Mrps17-206ENSMUST00000121339 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sox9Q04887 AC241621.2-201ENSMUST00000223991 2151 ntBASIC12.12□□□□□ -0.47
Sox9Q04887 Gm29100-201ENSMUST00000187564 4410 ntBASIC12.12□□□□□ -0.47
Sox9Q04887 Lrrfip1-204ENSMUST00000097650 2760 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 51.7 ms