Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Lamc3-201ENSMUST00000028187 5871 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col6a1Q04857 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Col6a1Q04857 Bmp4-202ENSMUST00000100676 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col6a1Q04857 Ralgps2-211ENSMUST00000190648 2498 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Col6a1Q04857 Gatad2a-201ENSMUST00000065169 3812 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col6a1Q04857 Htr2c-207ENSMUST00000156697 4654 ntTSL 5 BASIC12.98□□□□□ -0.33
Col6a1Q04857 Lhx6-201ENSMUST00000112960 3345 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
Col6a1Q04857 Prr18-202ENSMUST00000163887 3251 ntAPPRIS P1 TSL 3 BASIC12.98□□□□□ -0.33
Col6a1Q04857 Lig1-210ENSMUST00000165964 3166 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
Col6a1Q04857 Mtus1-202ENSMUST00000059115 6548 ntTSL 5 BASIC12.97□□□□□ -0.33
Col6a1Q04857 Nrf1-207ENSMUST00000115206 1879 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col6a1Q04857 CT009489.1-201ENSMUST00000227740 1893 ntBASIC12.97□□□□□ -0.33
Col6a1Q04857 Slc44a4-201ENSMUST00000007249 2261 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col6a1Q04857 Rin3-201ENSMUST00000056950 3892 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col6a1Q04857 Dstyk-201ENSMUST00000045110 6282 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col6a1Q04857 Gm14243-201ENSMUST00000131401 2172 ntTSL 2 BASIC12.97□□□□□ -0.33
Col6a1Q04857 EU599041-202ENSMUST00000205291 1386 ntTSL 5 BASIC12.97□□□□□ -0.33
Col6a1Q04857 Gm18782-201ENSMUST00000209023 1399 ntBASIC12.97□□□□□ -0.33
Col6a1Q04857 Dmrtc1b-203ENSMUST00000118842 1321 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col6a1Q04857 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC12.97□□□□□ -0.33
Col6a1Q04857 Foxj3-202ENSMUST00000106310 4660 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col6a1Q04857 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
Col6a1Q04857 Ndufs4-201ENSMUST00000022286 1698 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col6a1Q04857 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC12.97□□□□□ -0.33
Col6a1Q04857 Gm15004-201ENSMUST00000119192 630 ntBASIC12.97□□□□□ -0.33
Col6a1Q04857 Mrps17-207ENSMUST00000121813 868 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col6a1Q04857 Gm13558-201ENSMUST00000140464 554 ntTSL 2 BASIC12.97□□□□□ -0.33
Col6a1Q04857 Gm22146-201ENSMUST00000157397 288 ntBASIC12.97□□□□□ -0.33
Col6a1Q04857 Gm8451-201ENSMUST00000170338 447 ntBASIC12.97□□□□□ -0.33
Col6a1Q04857 Gm8888-201ENSMUST00000177677 381 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
Col6a1Q04857 Ccl19-ps3-201ENSMUST00000179634 324 ntBASIC12.97□□□□□ -0.33
Col6a1Q04857 Gm12407-201ENSMUST00000180219 324 ntBASIC12.97□□□□□ -0.33
Col6a1Q04857 A430027H14Rik-202ENSMUST00000192797 618 ntTSL 2 BASIC12.97□□□□□ -0.33
Col6a1Q04857 Cabcoco1-201ENSMUST00000020103 1262 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col6a1Q04857 Gm43852-201ENSMUST00000202098 917 ntBASIC12.97□□□□□ -0.33
Col6a1Q04857 Gm21221-201ENSMUST00000202876 1073 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Col6a1Q04857 Fxyd4-202ENSMUST00000203066 522 ntTSL 3 BASIC12.97□□□□□ -0.33
Col6a1Q04857 Gm35549-202ENSMUST00000203656 1009 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
Col6a1Q04857 D830035M03Rik-201ENSMUST00000213677 1041 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Col6a1Q04857 AC129308.3-201ENSMUST00000225652 524 ntBASIC12.97□□□□□ -0.33
Col6a1Q04857 Lgi3-203ENSMUST00000226548 1001 ntBASIC12.97□□□□□ -0.33
Col6a1Q04857 Cox17-201ENSMUST00000050273 444 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col6a1Q04857 Gm7536-201ENSMUST00000077389 444 ntBASIC12.97□□□□□ -0.33
Col6a1Q04857 Gm5453-201ENSMUST00000080866 447 ntBASIC12.97□□□□□ -0.33
Col6a1Q04857 Gm26035-201ENSMUST00000083065 308 ntBASIC12.97□□□□□ -0.33
Col6a1Q04857 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col6a1Q04857 Cadm1-203ENSMUST00000114547 4444 ntAPPRIS P4 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col6a1Q04857 Foxred1-202ENSMUST00000127996 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col6a1Q04857 Tmem237-202ENSMUST00000094917 1869 ntAPPRIS P4 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col6a1Q04857 Arsg-202ENSMUST00000106696 1508 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Col6a1Q04857 Lipe-208ENSMUST00000206861 3171 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col6a1Q04857 Nup160-201ENSMUST00000057481 5684 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col6a1Q04857 Sema4a-215ENSMUST00000169222 3084 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
Col6a1Q04857 Cisd2-201ENSMUST00000029815 3361 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col6a1Q04857 Camk2d-216ENSMUST00000163226 4204 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Col6a1Q04857 Pogk-202ENSMUST00000128861 4848 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col6a1Q04857 Lta-201ENSMUST00000025266 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col6a1Q04857 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Col6a1Q04857 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Col6a1Q04857 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col6a1Q04857 Cep41-203ENSMUST00000115131 2256 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
Col6a1Q04857 Grm5-202ENSMUST00000125009 8047 ntAPPRIS P3 TSL 5 BASIC12.96□□□□□ -0.33
Col6a1Q04857 Pdik1l-201ENSMUST00000061234 4686 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col6a1Q04857 Otop1-202ENSMUST00000114099 3141 ntAPPRIS P5 TSL 5 BASIC12.96□□□□□ -0.33
Col6a1Q04857 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col6a1Q04857 Kcna10-201ENSMUST00000055064 1913 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col6a1Q04857 Arhgap27-204ENSMUST00000107024 3976 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
Col6a1Q04857 Nudt8-201ENSMUST00000155405 3904 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
Col6a1Q04857 Qrich2-201ENSMUST00000093909 2156 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col6a1Q04857 Ankzf1-208ENSMUST00000152233 2739 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col6a1Q04857 Arid4a-201ENSMUST00000046305 4998 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Col6a1Q04857 Gm13791-201ENSMUST00000123263 608 ntTSL 3 BASIC12.96□□□□□ -0.33
Col6a1Q04857 Gm8723-201ENSMUST00000166076 820 ntBASIC12.96□□□□□ -0.33
Col6a1Q04857 Gm8701-201ENSMUST00000169259 874 ntBASIC12.96□□□□□ -0.33
Col6a1Q04857 Nudt12-203ENSMUST00000174122 1244 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Col6a1Q04857 Rhox5-201ENSMUST00000179626 633 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col6a1Q04857 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col6a1Q04857 Gm44711-201ENSMUST00000205414 1264 ntBASIC12.96□□□□□ -0.33
Col6a1Q04857 Mcee-201ENSMUST00000037205 828 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col6a1Q04857 Hils1-201ENSMUST00000038928 864 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
Col6a1Q04857 Myf6-201ENSMUST00000044210 1263 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col6a1Q04857 Olfr130-201ENSMUST00000087129 954 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
Col6a1Q04857 Tmppe-201ENSMUST00000111820 2921 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col6a1Q04857 D030068K23Rik-201ENSMUST00000180382 2617 ntTSL 2 BASIC12.96□□□□□ -0.33
Col6a1Q04857 Gm5936-201ENSMUST00000114116 2857 ntAPPRIS P1 TSL 3 BASIC12.96□□□□□ -0.34
Col6a1Q04857 Gm5640-201ENSMUST00000114119 2861 ntAPPRIS P1 TSL 3 BASIC12.96□□□□□ -0.34
Col6a1Q04857 DXBay18-201ENSMUST00000080324 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Col6a1Q04857 Gm14685-201ENSMUST00000088459 2864 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Col6a1Q04857 Mettl27-201ENSMUST00000047196 2808 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Col6a1Q04857 4930588G17Rik-201ENSMUST00000208075 1474 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Col6a1Q04857 Fgfr1op-201ENSMUST00000024636 3077 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
Col6a1Q04857 1110046J04Rik-202ENSMUST00000180906 2776 ntBASIC12.96□□□□□ -0.34
Col6a1Q04857 Mtus2-203ENSMUST00000085558 7543 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Col6a1Q04857 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Col6a1Q04857 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.34
Col6a1Q04857 AC166574.4-201ENSMUST00000227165 1937 ntBASIC12.96□□□□□ -0.34
Col6a1Q04857 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC12.96□□□□□ -0.34
Col6a1Q04857 Gm43365-201ENSMUST00000196522 2106 ntBASIC12.95□□□□□ -0.34
Col6a1Q04857 Gm43677-201ENSMUST00000198098 2378 ntBASIC12.95□□□□□ -0.34
Col6a1Q04857 Lyplal1-201ENSMUST00000045388 1578 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms