Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Rapgef2-206ENSMUST00000195708 6964 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
Col8a1Q00780 Kcnt1-212ENSMUST00000197917 3711 ntAPPRIS ALT2 TSL 5 BASIC10.04□□□□□ -0.8
Col8a1Q00780 Il1f5-205ENSMUST00000147885 1392 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Col8a1Q00780 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Col8a1Q00780 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Col8a1Q00780 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC10.04□□□□□ -0.8
Col8a1Q00780 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Col8a1Q00780 Exd1-201ENSMUST00000060009 6042 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Col8a1Q00780 Hddc3-201ENSMUST00000032747 1510 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Col8a1Q00780 Gm18263-201ENSMUST00000220846 1928 ntBASIC10.04□□□□□ -0.8
Col8a1Q00780 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Col8a1Q00780 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Col8a1Q00780 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Col8a1Q00780 Vsir-202ENSMUST00000105459 1290 ntTSL 5 BASIC10.04□□□□□ -0.8
Col8a1Q00780 Tcf7l2-204ENSMUST00000111649 982 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Col8a1Q00780 Gm15207-201ENSMUST00000119259 442 ntBASIC10.04□□□□□ -0.8
Col8a1Q00780 Zfp667-204ENSMUST00000153840 596 ntTSL 3 BASIC10.04□□□□□ -0.8
Col8a1Q00780 2700099C18Rik-202ENSMUST00000182402 1275 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Col8a1Q00780 Gm5714-201ENSMUST00000197343 566 ntBASIC10.04□□□□□ -0.8
Col8a1Q00780 Gm35549-202ENSMUST00000203656 1009 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
Col8a1Q00780 Gm45609-204ENSMUST00000209837 1207 ntTSL 5 BASIC10.04□□□□□ -0.8
Col8a1Q00780 Gm13539-202ENSMUST00000211245 552 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
Col8a1Q00780 Gm11361-201ENSMUST00000223428 607 ntAPPRIS P1 BASIC10.04□□□□□ -0.8
Col8a1Q00780 CT573086.4-201ENSMUST00000226729 342 ntBASIC10.04□□□□□ -0.8
Col8a1Q00780 2310057N15Rik-201ENSMUST00000054223 1028 ntAPPRIS P1 BASIC10.04□□□□□ -0.8
Col8a1Q00780 Bmp2-201ENSMUST00000028836 3555 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Col8a1Q00780 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Col8a1Q00780 Mob1a-201ENSMUST00000038658 4119 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Col8a1Q00780 Als2cl-203ENSMUST00000130386 5056 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Col8a1Q00780 Tle6-210ENSMUST00000142948 1961 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Col8a1Q00780 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Col8a1Q00780 Gm31518-201ENSMUST00000211925 2548 ntTSL 5 BASIC10.04□□□□□ -0.8
Col8a1Q00780 Ermard-202ENSMUST00000061688 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Col8a1Q00780 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Col8a1Q00780 Fbxo39-201ENSMUST00000108504 1708 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
Col8a1Q00780 AC151895.1-201ENSMUST00000219025 1742 ntBASIC10.04□□□□□ -0.8
Col8a1Q00780 Unc45a-201ENSMUST00000032748 3260 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Col8a1Q00780 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Col8a1Q00780 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Col8a1Q00780 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Col8a1Q00780 Gm44851-201ENSMUST00000205735 2309 ntBASIC10.04□□□□□ -0.8
Col8a1Q00780 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC10.04□□□□□ -0.8
Col8a1Q00780 Abcd3-201ENSMUST00000029770 3489 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Col8a1Q00780 Pck2-205ENSMUST00000226352 2784 ntBASIC10.03□□□□□ -0.8
Col8a1Q00780 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Col8a1Q00780 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC10.03□□□□□ -0.8
Col8a1Q00780 Saa3-202ENSMUST00000210913 2200 ntTSL 3 BASIC10.03□□□□□ -0.8
Col8a1Q00780 Plekhm1-201ENSMUST00000041272 5968 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Col8a1Q00780 BC030867-201ENSMUST00000100392 2547 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Col8a1Q00780 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Col8a1Q00780 Akr1d1-201ENSMUST00000040987 2699 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Col8a1Q00780 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Col8a1Q00780 EU599041-202ENSMUST00000205291 1386 ntTSL 5 BASIC10.03□□□□□ -0.8
Col8a1Q00780 Slc25a25-205ENSMUST00000113310 3278 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Col8a1Q00780 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC10.03□□□□□ -0.8
Col8a1Q00780 Terb2-201ENSMUST00000028661 2115 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Col8a1Q00780 Dnm1-202ENSMUST00000091089 3764 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Col8a1Q00780 Bdnf-205ENSMUST00000111045 3973 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Col8a1Q00780 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Col8a1Q00780 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Col8a1Q00780 Rpl19-ps1-201ENSMUST00000121059 591 ntBASIC10.03□□□□□ -0.8
Col8a1Q00780 Mrps17-207ENSMUST00000121813 868 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Col8a1Q00780 Gm15569-201ENSMUST00000133675 594 ntTSL 3 BASIC10.03□□□□□ -0.8
Col8a1Q00780 Gm13965-201ENSMUST00000154834 576 ntTSL 3 BASIC10.03□□□□□ -0.8
Col8a1Q00780 Gm28529-201ENSMUST00000186159 387 ntTSL 3 BASIC10.03□□□□□ -0.8
Col8a1Q00780 Gm9916-201ENSMUST00000192943 1228 ntBASIC10.03□□□□□ -0.8
Col8a1Q00780 Tmbim7-204ENSMUST00000198739 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC10.03□□□□□ -0.8
Col8a1Q00780 Gm3726-201ENSMUST00000203110 785 ntBASIC10.03□□□□□ -0.8
Col8a1Q00780 Gm44867-201ENSMUST00000205675 530 ntTSL 3 BASIC10.03□□□□□ -0.8
Col8a1Q00780 Gm44507-201ENSMUST00000206249 343 ntTSL 5 BASIC10.03□□□□□ -0.8
Col8a1Q00780 Gm44506-201ENSMUST00000206278 965 ntBASIC10.03□□□□□ -0.8
Col8a1Q00780 Gm18968-201ENSMUST00000221319 862 ntBASIC10.03□□□□□ -0.8
Col8a1Q00780 AC154572.1-201ENSMUST00000226098 1204 ntBASIC10.03□□□□□ -0.8
Col8a1Q00780 Ccdc28b-201ENSMUST00000030586 879 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Col8a1Q00780 C8g-202ENSMUST00000040042 1150 ntAPPRIS P3 TSL 1 (best) BASIC10.03□□□□□ -0.8
Col8a1Q00780 Armc5-201ENSMUST00000044660 3834 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Col8a1Q00780 Chmp3-202ENSMUST00000065364 998 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Col8a1Q00780 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Col8a1Q00780 Stat5b-202ENSMUST00000107358 5213 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Col8a1Q00780 Asb13-201ENSMUST00000042288 4453 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Col8a1Q00780 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC10.03□□□□□ -0.8
Col8a1Q00780 Cic-212ENSMUST00000169266 8221 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Col8a1Q00780 Nudt8-201ENSMUST00000155405 3904 ntAPPRIS P1 TSL 2 BASIC10.03□□□□□ -0.8
Col8a1Q00780 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC10.03□□□□□ -0.8
Col8a1Q00780 Harbi1-202ENSMUST00000111322 1316 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Col8a1Q00780 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC10.03□□□□□ -0.8
Col8a1Q00780 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC10.03□□□□□ -0.8
Col8a1Q00780 Eps8l3-201ENSMUST00000037375 2271 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Col8a1Q00780 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC10.03□□□□□ -0.8
Col8a1Q00780 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Col8a1Q00780 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.8
Col8a1Q00780 Lnx1-206ENSMUST00000121690 2302 ntTSL 1 (best) BASIC10.02□□□□□ -0.8
Col8a1Q00780 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC10.02□□□□□ -0.8
Col8a1Q00780 Phf21a-209ENSMUST00000111297 6188 ntAPPRIS ALT2 TSL 5 BASIC10.02□□□□□ -0.8
Col8a1Q00780 Phf21a-201ENSMUST00000044036 6187 ntAPPRIS ALT2 TSL 5 BASIC10.02□□□□□ -0.8
Col8a1Q00780 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC10.02□□□□□ -0.8
Col8a1Q00780 Cntnap4-201ENSMUST00000034225 4848 ntAPPRIS P2 TSL 1 (best) BASIC10.02□□□□□ -0.8
Col8a1Q00780 1700025G04Rik-201ENSMUST00000044581 9559 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.8
Col8a1Q00780 Jph2-202ENSMUST00000109425 4155 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.8
Col8a1Q00780 Grm7-202ENSMUST00000172951 4197 ntAPPRIS P3 TSL 1 (best) BASIC10.02□□□□□ -0.8
Retrieved 100 of 76,532 protein–RNA pairs in 65.2 ms