Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gpr137b-ps-202ENSMUST00000220647 1159 ntBASIC17.73■□□□□ 0.43
Cux1P53564 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Cux1P53564 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Cux1P53564 Srr-201ENSMUST00000065211 3699 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Cux1P53564 Tcf12-218ENSMUST00000184783 3489 ntAPPRIS P3 TSL 5 BASIC17.73■□□□□ 0.43
Cux1P53564 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Cux1P53564 Itgb1bp1-206ENSMUST00000173729 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Cux1P53564 Gm12474-201ENSMUST00000122898 1410 ntTSL 2 BASIC17.73■□□□□ 0.43
Cux1P53564 Eef1a1-201ENSMUST00000042235 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Cux1P53564 Osbp2-203ENSMUST00000102950 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Cux1P53564 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Cux1P53564 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Cux1P53564 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Cux1P53564 Slc39a9-204ENSMUST00000217889 2155 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Cux1P53564 Rap1gap-201ENSMUST00000047243 3247 ntAPPRIS P3 TSL 5 BASIC17.73■□□□□ 0.43
Cux1P53564 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
Cux1P53564 Gm4593-201ENSMUST00000205334 1555 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Cux1P53564 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Cux1P53564 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Cux1P53564 Dcaf12-201ENSMUST00000030145 3442 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cux1P53564 Rmdn1-202ENSMUST00000108253 806 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cux1P53564 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cux1P53564 Zfp637-210ENSMUST00000164472 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cux1P53564 Gm37782-201ENSMUST00000194879 678 ntBASIC17.72■□□□□ 0.43
Cux1P53564 Gm44507-201ENSMUST00000206249 343 ntTSL 5 BASIC17.72■□□□□ 0.43
Cux1P53564 Pla2g1b-201ENSMUST00000031495 557 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cux1P53564 Olfr71-201ENSMUST00000055401 939 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Cux1P53564 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cux1P53564 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cux1P53564 Gm45012-201ENSMUST00000208323 1666 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Cux1P53564 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cux1P53564 Spata7-201ENSMUST00000048402 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cux1P53564 Lmo3-206ENSMUST00000163024 1331 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cux1P53564 Gm10305-201ENSMUST00000195331 2475 ntBASIC17.72■□□□□ 0.43
Cux1P53564 Gm43365-201ENSMUST00000196522 2106 ntBASIC17.72■□□□□ 0.43
Cux1P53564 Cryz-208ENSMUST00000192462 2505 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cux1P53564 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Cux1P53564 Gm5592-202ENSMUST00000206490 2623 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Cux1P53564 Spata20-201ENSMUST00000041705 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cux1P53564 Gm11470-201ENSMUST00000118868 1475 ntBASIC17.72■□□□□ 0.43
Cux1P53564 Ppp2r5c-205ENSMUST00000221715 2367 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Cux1P53564 BC017643-201ENSMUST00000038709 2417 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cux1P53564 Rusc1-201ENSMUST00000052539 3316 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cux1P53564 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Cux1P53564 Xylb-201ENSMUST00000039610 3383 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cux1P53564 4931406C07Rik-202ENSMUST00000178977 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cux1P53564 Taf3-201ENSMUST00000026888 4792 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cux1P53564 Plac8-203ENSMUST00000112910 1224 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
Cux1P53564 Gm11996-201ENSMUST00000117538 915 ntBASIC17.72■□□□□ 0.43
Cux1P53564 Gm5340-201ENSMUST00000203733 880 ntBASIC17.72■□□□□ 0.43
Cux1P53564 P2rx7-202ENSMUST00000086247 712 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Cux1P53564 Tgfbr1-202ENSMUST00000044234 2861 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cux1P53564 Psmd12-202ENSMUST00000106750 1311 ntTSL 5 BASIC17.72■□□□□ 0.43
Cux1P53564 Magea2-202ENSMUST00000112559 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cux1P53564 Uqcrc2-201ENSMUST00000033176 1896 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cux1P53564 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Cux1P53564 Ngef-202ENSMUST00000068681 3109 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.43
Cux1P53564 Nr1i3-201ENSMUST00000005820 1414 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Cux1P53564 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Cux1P53564 Gm43152-201ENSMUST00000202495 1638 ntBASIC17.71■□□□□ 0.43
Cux1P53564 Rtn4ip1-201ENSMUST00000054418 2981 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Cux1P53564 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Cux1P53564 Gm16564-201ENSMUST00000162545 3010 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Cux1P53564 Dpt-201ENSMUST00000027861 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Cux1P53564 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Cux1P53564 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Cux1P53564 Jup-201ENSMUST00000001592 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Cux1P53564 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Cux1P53564 Tpgs2-201ENSMUST00000115817 4159 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Cux1P53564 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Cux1P53564 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC17.71■□□□□ 0.43
Cux1P53564 Smim8-204ENSMUST00000108133 935 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Cux1P53564 Gm3409-202ENSMUST00000110599 1154 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
Cux1P53564 1700001C02Rik-202ENSMUST00000114743 729 ntTSL 5 BASIC17.71■□□□□ 0.43
Cux1P53564 1700006J14Rik-204ENSMUST00000161511 574 ntTSL 3 BASIC17.71■□□□□ 0.43
Cux1P53564 Gm3415-202ENSMUST00000179214 1154 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
Cux1P53564 Gm19927-201ENSMUST00000185792 781 ntBASIC17.71■□□□□ 0.43
Cux1P53564 Gm3409-203ENSMUST00000199142 1167 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Cux1P53564 Gm3402-203ENSMUST00000200228 1154 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
Cux1P53564 Gm9353-201ENSMUST00000200472 604 ntBASIC17.71■□□□□ 0.43
Cux1P53564 Gm4903-201ENSMUST00000210462 405 ntBASIC17.71■□□□□ 0.43
Cux1P53564 Gm5178-201ENSMUST00000219380 898 ntBASIC17.71■□□□□ 0.43
Cux1P53564 Nme6-201ENSMUST00000035053 1074 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Cux1P53564 Rab7-201ENSMUST00000095048 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Cux1P53564 Pde4b-206ENSMUST00000106907 1374 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Cux1P53564 Rftn1-202ENSMUST00000113195 2385 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Cux1P53564 Fcgr1-201ENSMUST00000029748 2589 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Cux1P53564 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Cux1P53564 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Cux1P53564 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Cux1P53564 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Cux1P53564 E330021D16Rik-203ENSMUST00000204830 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Cux1P53564 Gm6157-201ENSMUST00000199935 1897 ntBASIC17.7■□□□□ 0.42
Cux1P53564 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Cux1P53564 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Cux1P53564 Irf5-202ENSMUST00000163511 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Cux1P53564 1700001L05Rik-201ENSMUST00000100370 2270 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Cux1P53564 Pde4b-203ENSMUST00000097950 2756 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Cux1P53564 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Cux1P53564 Hmgn2-201ENSMUST00000100472 881 ntAPPRIS ALT1 TSL 2 BASIC17.7■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms