Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Kat6b-204ENSMUST00000182405 6977 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Lima1Q9ERG0 D930032P07Rik-201ENSMUST00000181393 1314 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Lima1Q9ERG0 Nop14-201ENSMUST00000041364 2702 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Lima1Q9ERG0 Ddx56-201ENSMUST00000004507 1956 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Lima1Q9ERG0 Gcc1-202ENSMUST00000090511 4650 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 Nek1-208ENSMUST00000211256 4810 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 Gm44755-201ENSMUST00000207830 2102 ntBASIC11.57□□□□□ -0.56
Lima1Q9ERG0 Gcn1l1-201ENSMUST00000064454 8555 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC11.57□□□□□ -0.56
Lima1Q9ERG0 Tie1-201ENSMUST00000047421 4091 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 Immt-202ENSMUST00000101301 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 Rpap2-204ENSMUST00000112654 2914 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 H2-Q1-201ENSMUST00000073208 2024 ntAPPRIS P2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 Trpm7-202ENSMUST00000103224 7107 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 Gm15411-201ENSMUST00000133243 3488 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 Epha5-205ENSMUST00000113403 4675 ntAPPRIS P5 TSL 5 BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 Stkld1-201ENSMUST00000055406 2169 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 Rsl24d1-201ENSMUST00000034738 1543 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 F10-201ENSMUST00000033821 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 Smtn-203ENSMUST00000075118 3117 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 Gm10803-201ENSMUST00000099692 2483 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 Luc7l-201ENSMUST00000025023 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 Gm25214-201ENSMUST00000104573 129 ntBASIC11.57□□□□□ -0.56
Lima1Q9ERG0 Gm14832-201ENSMUST00000121289 322 ntBASIC11.57□□□□□ -0.56
Lima1Q9ERG0 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 Gm24845-201ENSMUST00000158034 109 ntBASIC11.57□□□□□ -0.56
Lima1Q9ERG0 Pcgf1-202ENSMUST00000165164 918 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 Nudt17-202ENSMUST00000171249 1110 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 C1qtnf2-203ENSMUST00000173002 1147 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 Gm3893-201ENSMUST00000178882 909 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 Anapc16-205ENSMUST00000182912 566 ntTSL 2 BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 4930562F07Rik-201ENSMUST00000028061 830 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 Itln1-201ENSMUST00000043094 1141 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 Msantd1-201ENSMUST00000050535 2793 ntAPPRIS P2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 Atp6v1a-201ENSMUST00000063661 3896 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 Atl2-202ENSMUST00000112437 3371 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 Spock2-203ENSMUST00000165024 3699 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 Stat5b-202ENSMUST00000107358 5213 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC11.57□□□□□ -0.56
Lima1Q9ERG0 H2-T24-201ENSMUST00000113760 2182 ntAPPRIS P1 TSL 2 BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 Ascc1-202ENSMUST00000164083 1473 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 Eno3-206ENSMUST00000170716 1461 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Lima1Q9ERG0 Ubxn6-201ENSMUST00000019722 2949 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Lima1Q9ERG0 AF529169-201ENSMUST00000044491 7202 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Lima1Q9ERG0 Rnls-202ENSMUST00000163093 1378 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Lima1Q9ERG0 Pnmal2-201ENSMUST00000094807 4147 ntAPPRIS P1 BASIC11.56□□□□□ -0.56
Lima1Q9ERG0 Atic-201ENSMUST00000027384 2845 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Lima1Q9ERG0 Ercc8-201ENSMUST00000054835 2111 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Lima1Q9ERG0 Hnrnph2-203ENSMUST00000074950 2426 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Lima1Q9ERG0 Fn1-214ENSMUST00000188894 8043 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
Lima1Q9ERG0 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC11.56□□□□□ -0.56
Lima1Q9ERG0 Gm5940-201ENSMUST00000117582 1068 ntBASIC11.56□□□□□ -0.56
Lima1Q9ERG0 Tex22-201ENSMUST00000012355 1267 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Lima1Q9ERG0 Gm12316-201ENSMUST00000125853 406 ntTSL 5 BASIC11.56□□□□□ -0.56
Lima1Q9ERG0 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC11.56□□□□□ -0.56
Lima1Q9ERG0 Gm28638-201ENSMUST00000188152 288 ntTSL 5 BASIC11.56□□□□□ -0.56
Lima1Q9ERG0 Gm44172-201ENSMUST00000203903 1235 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Lima1Q9ERG0 Olfr1415-203ENSMUST00000204766 403 ntTSL 3 BASIC11.56□□□□□ -0.56
Lima1Q9ERG0 Gm17931-201ENSMUST00000208132 634 ntBASIC11.56□□□□□ -0.56
Lima1Q9ERG0 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC11.56□□□□□ -0.56
Lima1Q9ERG0 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC11.56□□□□□ -0.56
Lima1Q9ERG0 AC113031.8-201ENSMUST00000227856 631 ntBASIC11.56□□□□□ -0.56
Lima1Q9ERG0 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Lima1Q9ERG0 Mrrf-201ENSMUST00000028250 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Lima1Q9ERG0 Gm7399-201ENSMUST00000032395 858 ntBASIC11.56□□□□□ -0.56
Lima1Q9ERG0 Gm8399-201ENSMUST00000082300 1117 ntBASIC11.56□□□□□ -0.56
Lima1Q9ERG0 Cep76-201ENSMUST00000097542 3979 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Lima1Q9ERG0 Gm10548-201ENSMUST00000097631 2629 ntBASIC11.56□□□□□ -0.56
Lima1Q9ERG0 Nup210-201ENSMUST00000032179 7037 ntAPPRIS P2 TSL 1 (best) BASIC11.56□□□□□ -0.56
Lima1Q9ERG0 Sugp1-201ENSMUST00000011450 2681 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Lima1Q9ERG0 4930520O04Rik-202ENSMUST00000131898 2660 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Lima1Q9ERG0 Pck1-201ENSMUST00000029017 2661 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Lima1Q9ERG0 Pou6f1-201ENSMUST00000058274 2523 ntTSL 2 BASIC11.56□□□□□ -0.56
Lima1Q9ERG0 Rai2-201ENSMUST00000061514 2204 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Lima1Q9ERG0 Gm13657-201ENSMUST00000135682 1939 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Lima1Q9ERG0 Atp1a3-201ENSMUST00000080882 3621 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Lima1Q9ERG0 Brwd1-204ENSMUST00000113829 9843 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
Lima1Q9ERG0 Dusp19-201ENSMUST00000028384 1632 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Lima1Q9ERG0 Magi1-203ENSMUST00000093769 4598 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Lima1Q9ERG0 Prdm1-201ENSMUST00000039174 5281 ntAPPRIS ALT2 TSL 2 BASIC11.56□□□□□ -0.56
Lima1Q9ERG0 Rps6ka6-203ENSMUST00000096348 4151 ntAPPRIS ALT2 TSL 2 BASIC11.56□□□□□ -0.56
Lima1Q9ERG0 Tspan18-202ENSMUST00000111265 3751 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
Lima1Q9ERG0 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Lima1Q9ERG0 Mfsd7a-201ENSMUST00000031455 2508 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Lima1Q9ERG0 Abi1-208ENSMUST00000139038 2899 ntAPPRIS ALT1 TSL 5 BASIC11.55□□□□□ -0.56
Lima1Q9ERG0 Ptpru-202ENSMUST00000097860 3365 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Lima1Q9ERG0 AC159195.3-201ENSMUST00000225162 2211 ntBASIC11.55□□□□□ -0.56
Lima1Q9ERG0 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Lima1Q9ERG0 AC153506.1-201ENSMUST00000218768 2915 ntBASIC11.55□□□□□ -0.56
Lima1Q9ERG0 Tmc5-202ENSMUST00000098088 3774 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
Lima1Q9ERG0 Iqsec1-201ENSMUST00000101151 6490 ntTSL 5 BASIC11.55□□□□□ -0.56
Lima1Q9ERG0 Nfia-202ENSMUST00000075448 9526 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Lima1Q9ERG0 Zmym3-205ENSMUST00000119699 1750 ntTSL 5 BASIC11.55□□□□□ -0.56
Retrieved 100 of 76,532 protein–RNA pairs in 66.3 ms