Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Ttc16-206ENSMUST00000161430 2874 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Fga-202ENSMUST00000166581 2587 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Hif1an-201ENSMUST00000040455 6194 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Nfya-202ENSMUST00000078800 3653 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Gm43773-201ENSMUST00000198548 2162 ntBASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 Ahrr-201ENSMUST00000022059 4754 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 Itgad-201ENSMUST00000033051 3965 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 2700049A03Rik-203ENSMUST00000149564 5763 ntAPPRIS P4 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 C130013H08Rik-201ENSMUST00000197569 3692 ntBASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 Pabpc1l-201ENSMUST00000067715 2354 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 Ablim1-211ENSMUST00000111555 2562 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 B630019A10Rik-201ENSMUST00000149488 2407 ntTSL 2 BASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 Sema4g-203ENSMUST00000179305 4290 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 Plscr3-203ENSMUST00000108633 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 Agbl2-201ENSMUST00000037206 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 Frmpd3-203ENSMUST00000208130 7314 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 Gm42741-201ENSMUST00000201340 2278 ntBASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 Gm10436-202ENSMUST00000220521 1788 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 Ifi211-201ENSMUST00000009340 1785 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 Mup-ps23-201ENSMUST00000118063 630 ntBASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 Gm15376-201ENSMUST00000122258 783 ntBASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 Gm6439-201ENSMUST00000199849 862 ntBASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 Ddx3x-201ENSMUST00000000804 4692 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 Rapgef6-202ENSMUST00000101206 5864 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 Ilf3-208ENSMUST00000214758 3177 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 Gm10614-201ENSMUST00000181414 2538 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 Hivep1-201ENSMUST00000060148 8753 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 Slc44a4-202ENSMUST00000169230 2246 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 AC117656.2-201ENSMUST00000224931 2215 ntBASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 Gm18210-201ENSMUST00000209001 1524 ntBASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 Tubb5-201ENSMUST00000001566 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ccdc9Q8VC31 Sstr2-203ENSMUST00000146390 2143 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Ccdc9Q8VC31 Pkp4-201ENSMUST00000037903 4378 ntTSL 5 BASIC14.09□□□□□ -0.15
Ccdc9Q8VC31 Exog-201ENSMUST00000035094 3832 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ccdc9Q8VC31 Pigo-202ENSMUST00000098109 4239 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ccdc9Q8VC31 Axin2-201ENSMUST00000052915 4260 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ccdc9Q8VC31 Rims1-204ENSMUST00000097810 6362 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Ccdc9Q8VC31 Npc1l1-201ENSMUST00000004505 4467 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ccdc9Q8VC31 Kalrn-209ENSMUST00000114963 3207 ntTSL 5 BASIC14.09□□□□□ -0.15
Ccdc9Q8VC31 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
Ccdc9Q8VC31 Gm15371-201ENSMUST00000117057 784 ntBASIC14.09□□□□□ -0.15
Ccdc9Q8VC31 Gm12859-201ENSMUST00000117834 427 ntBASIC14.09□□□□□ -0.15
Ccdc9Q8VC31 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC14.09□□□□□ -0.15
Ccdc9Q8VC31 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC14.09□□□□□ -0.15
Ccdc9Q8VC31 Gm17058-201ENSMUST00000168951 928 ntTSL 5 BASIC14.09□□□□□ -0.15
Ccdc9Q8VC31 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Ccdc9Q8VC31 Gm38223-201ENSMUST00000194484 695 ntBASIC14.09□□□□□ -0.15
Ccdc9Q8VC31 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ccdc9Q8VC31 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ccdc9Q8VC31 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC14.09□□□□□ -0.15
Ccdc9Q8VC31 Nr2f2-202ENSMUST00000089565 1664 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Ccdc9Q8VC31 Mpp4-204ENSMUST00000186477 1885 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Ccdc9Q8VC31 Muc3-201ENSMUST00000041226 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ccdc9Q8VC31 Ubr1-201ENSMUST00000028728 7768 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ccdc9Q8VC31 Apobec1-201ENSMUST00000112585 2127 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ccdc9Q8VC31 Bsn-201ENSMUST00000035208 15938 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Ccdc9Q8VC31 Arhgap24-204ENSMUST00000112852 2783 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Ccdc9Q8VC31 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Ccdc9Q8VC31 Slf2-201ENSMUST00000096053 6880 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ccdc9Q8VC31 Bbs2-201ENSMUST00000034206 3064 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ccdc9Q8VC31 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Ccdc9Q8VC31 Rhobtb1-201ENSMUST00000020101 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Ccdc9Q8VC31 Zfp629-203ENSMUST00000122066 5850 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Ccdc9Q8VC31 Chst15-202ENSMUST00000080215 4813 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Ccdc9Q8VC31 Anln-201ENSMUST00000040912 4605 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Ccdc9Q8VC31 Gm42449-201ENSMUST00000200349 2258 ntBASIC14.08□□□□□ -0.15
Ccdc9Q8VC31 Slc6a12-205ENSMUST00000166457 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Ccdc9Q8VC31 Unkl-201ENSMUST00000015271 3414 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Ccdc9Q8VC31 Snap29-201ENSMUST00000023449 3429 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Ccdc9Q8VC31 Ric8a-201ENSMUST00000026558 3406 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Ccdc9Q8VC31 Fut10-202ENSMUST00000110527 2327 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Ccdc9Q8VC31 Gm44755-201ENSMUST00000207830 2102 ntBASIC14.08□□□□□ -0.16
Ccdc9Q8VC31 Pop1-202ENSMUST00000079028 3275 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Ccdc9Q8VC31 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Ccdc9Q8VC31 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Ccdc9Q8VC31 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Ccdc9Q8VC31 Gm12341-201ENSMUST00000119724 503 ntBASIC14.08□□□□□ -0.16
Ccdc9Q8VC31 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC14.08□□□□□ -0.16
Ccdc9Q8VC31 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Ccdc9Q8VC31 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Ccdc9Q8VC31 Gm37917-201ENSMUST00000194711 392 ntBASIC14.08□□□□□ -0.16
Ccdc9Q8VC31 Gm38297-201ENSMUST00000195122 1057 ntBASIC14.08□□□□□ -0.16
Ccdc9Q8VC31 Psenen-203ENSMUST00000207747 669 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
Ccdc9Q8VC31 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Ccdc9Q8VC31 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC14.08□□□□□ -0.16
Ccdc9Q8VC31 Gm5626-201ENSMUST00000222151 1058 ntBASIC14.08□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 34.4 ms