Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Rgs11-201ENSMUST00000025020 2006 ntAPPRIS P2 TSL 2 BASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 March7-202ENSMUST00000102747 2271 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 Slc12a9-201ENSMUST00000039991 3330 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 Kcnk18-201ENSMUST00000065204 3032 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 Hdac7-205ENSMUST00000118294 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 Slc6a5-202ENSMUST00000107605 2467 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 Grin2b-205ENSMUST00000152012 2461 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 Rcor3-202ENSMUST00000110849 3791 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 CU062626.3-201ENSMUST00000225522 1411 ntBASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 5430400D12Rik-201ENSMUST00000181717 1690 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 Gm43773-201ENSMUST00000198548 2162 ntBASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 Gucy1a3-204ENSMUST00000193924 4710 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Rad51b-202ENSMUST00000171210 1858 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Lnx1-203ENSMUST00000113531 3098 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Trim55-201ENSMUST00000029139 2595 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Foxp1-221ENSMUST00000176632 2336 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Foxp1-222ENSMUST00000176850 2339 ntAPPRIS ALT1 TSL 5 BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Trit1-201ENSMUST00000102649 2074 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Tmem8b-201ENSMUST00000107864 4726 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Ccdc189-201ENSMUST00000072155 2536 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Dcaf1-202ENSMUST00000159645 4945 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Fam227a-204ENSMUST00000187519 2283 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Fxyd5-212ENSMUST00000162733 2998 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Lgals8-201ENSMUST00000099820 2736 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Xpot-203ENSMUST00000218004 6005 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Foxred1-201ENSMUST00000043805 2232 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Plcd4-206ENSMUST00000113750 2692 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Cela2a-201ENSMUST00000102481 1070 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Ins2-203ENSMUST00000105931 472 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Gm14597-202ENSMUST00000129769 715 ntAPPRIS P5 TSL 3 BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Gm17040-201ENSMUST00000168672 548 ntTSL 3 BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Stard10-207ENSMUST00000173270 670 ntTSL 5 BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Gm20865-201ENSMUST00000179095 856 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 1700125G22Rik-201ENSMUST00000181124 861 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 CT009486.1-201ENSMUST00000222047 661 ntTSL 3 BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Olfr368-201ENSMUST00000053990 985 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Rpl10a-ps2-201ENSMUST00000071184 642 ntBASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Olfr117-201ENSMUST00000073636 954 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Olfr130-201ENSMUST00000087129 954 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Thy1-201ENSMUST00000114840 1735 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Gm26735-201ENSMUST00000180992 2649 ntTSL 5 BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Gm5475-202ENSMUST00000148928 2320 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Wt1os-203ENSMUST00000172701 2960 ntTSL 2 BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Otud7b-201ENSMUST00000035519 8043 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Npepps-201ENSMUST00000001480 4215 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Slamf7-204ENSMUST00000194531 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 C230014O12Rik-201ENSMUST00000134921 2668 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Becn1-205ENSMUST00000130916 4365 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Msh5-201ENSMUST00000007250 2886 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Dennd4b-201ENSMUST00000098914 5423 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sh3rf1Q69ZI1 Trim25-203ENSMUST00000107896 5590 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Vasn-201ENSMUST00000038770 2829 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Gm11696-203ENSMUST00000188296 1793 ntTSL 3 BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Abhd18-203ENSMUST00000159774 4455 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Gm37969-201ENSMUST00000195777 3409 ntBASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Nnt-203ENSMUST00000109204 3198 ntTSL 5 BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Pgbd5-203ENSMUST00000136892 1739 ntAPPRIS P2 TSL 5 BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Gm45495-201ENSMUST00000200940 1700 ntBASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Slc37a4-207ENSMUST00000215420 2128 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Kcnq3-201ENSMUST00000070256 11824 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Kcnj11-205ENSMUST00000211674 3142 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Phka2-203ENSMUST00000112377 3947 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Wdr26-208ENSMUST00000162963 6452 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Gm43963-201ENSMUST00000203466 2488 ntBASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Gm11564-201ENSMUST00000105055 691 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Gm11596-201ENSMUST00000105058 1079 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Ncmap-202ENSMUST00000105857 958 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Gm14051-201ENSMUST00000131603 377 ntTSL 3 BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Glmp-201ENSMUST00000001454 1017 ntTSL 5 BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Cox16-204ENSMUST00000166723 579 ntTSL 2 BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Gm3625-201ENSMUST00000170816 102 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Gm28172-201ENSMUST00000189880 506 ntTSL 3 BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Rpl7a-ps2-201ENSMUST00000200554 774 ntBASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Gm32633-201ENSMUST00000205726 587 ntTSL 3 BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 1700012D14Rik-202ENSMUST00000209959 629 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Agrp-201ENSMUST00000005849 661 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Pou2f1-202ENSMUST00000069609 2402 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Ccl22-201ENSMUST00000034231 2216 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Mob1a-201ENSMUST00000038658 4119 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Cdc14a-201ENSMUST00000090464 4485 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Nr5a1-201ENSMUST00000028084 2947 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Ppp2r1b-201ENSMUST00000034560 3647 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Serpina16-202ENSMUST00000164148 1582 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Myo9b-202ENSMUST00000168839 7102 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Xpnpep1-211ENSMUST00000183274 2120 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Msh5-202ENSMUST00000097338 2678 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Chek1-202ENSMUST00000172702 3797 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Tspan14-202ENSMUST00000224209 2477 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Zfp235-201ENSMUST00000056549 3373 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sh3rf1Q69ZI1 Art2b-202ENSMUST00000209526 2819 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 42.3 ms