Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 1110028F11Rik-201ENSMUST00000137077 837 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Rnf40Q3U319 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Rnf40Q3U319 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC12.43□□□□□ -0.42
Rnf40Q3U319 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC12.43□□□□□ -0.42
Rnf40Q3U319 Gm27010-201ENSMUST00000182727 863 ntTSL 3 BASIC12.43□□□□□ -0.42
Rnf40Q3U319 Gm27430-201ENSMUST00000184585 107 ntBASIC12.43□□□□□ -0.42
Rnf40Q3U319 Gm17837-201ENSMUST00000186435 985 ntBASIC12.43□□□□□ -0.42
Rnf40Q3U319 Gm6657-203ENSMUST00000188791 531 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
Rnf40Q3U319 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Rnf40Q3U319 Gm44333-201ENSMUST00000197168 107 ntBASIC12.43□□□□□ -0.42
Rnf40Q3U319 4930599N24Rik-201ENSMUST00000198822 1003 ntBASIC12.43□□□□□ -0.42
Rnf40Q3U319 AC159297.2-201ENSMUST00000219567 1075 ntBASIC12.43□□□□□ -0.42
Rnf40Q3U319 Gm32235-202ENSMUST00000220286 898 ntTSL 5 BASIC12.43□□□□□ -0.42
Rnf40Q3U319 Gm18026-201ENSMUST00000222789 727 ntBASIC12.43□□□□□ -0.42
Rnf40Q3U319 Speer6-ps1-203ENSMUST00000223482 979 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Rnf40Q3U319 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Rnf40Q3U319 Tmem212-201ENSMUST00000058077 716 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Rnf40Q3U319 Prl8a9-201ENSMUST00000006662 942 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Rnf40Q3U319 Olfr816-201ENSMUST00000071605 939 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Rnf40Q3U319 Gm10147-201ENSMUST00000075388 864 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Rnf40Q3U319 Olfr1428-201ENSMUST00000087824 945 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Rnf40Q3U319 Dpysl4-201ENSMUST00000026551 3552 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Rnf40Q3U319 6330537M06Rik-201ENSMUST00000212384 1642 ntBASIC12.43□□□□□ -0.42
Rnf40Q3U319 Hars2-206ENSMUST00000152954 3336 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Rnf40Q3U319 4632415L05Rik-202ENSMUST00000198527 4087 ntBASIC12.43□□□□□ -0.42
Rnf40Q3U319 Tas1r2-202ENSMUST00000166773 2524 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Rnf40Q3U319 Adcy8-201ENSMUST00000023007 6990 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Rnf40Q3U319 Slc26a11-201ENSMUST00000050880 2695 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Rnf40Q3U319 Gm13127-201ENSMUST00000118978 1389 ntBASIC12.43□□□□□ -0.42
Rnf40Q3U319 Ccdc96-201ENSMUST00000060100 3585 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Rnf40Q3U319 Ppp1r16b-202ENSMUST00000052927 6685 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Rnf40Q3U319 Prx-201ENSMUST00000065487 4497 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Rnf40Q3U319 Gm11525-201ENSMUST00000134436 2804 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Rnf40Q3U319 Ccdc15-206ENSMUST00000217238 1747 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Ctcfl-202ENSMUST00000179693 3174 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Colec12-201ENSMUST00000040069 3322 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Ppargc1b-201ENSMUST00000063307 3330 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Gm38115-201ENSMUST00000194317 2413 ntTSL 5 BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Pde6b-201ENSMUST00000031456 2799 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Chrnb2-203ENSMUST00000200558 3482 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Flad1-202ENSMUST00000107426 2238 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Myom3-201ENSMUST00000105854 5575 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Gm7538-201ENSMUST00000200918 1348 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Gm36235-201ENSMUST00000223158 1694 ntTSL 5 BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Dctn1-205ENSMUST00000113919 4292 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Tfip11-201ENSMUST00000031288 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Aldh3a2-201ENSMUST00000066277 2892 ntTSL 2 BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Wars-204ENSMUST00000161154 1824 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Gm28035-201ENSMUST00000139454 4238 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Rnf40Q3U319 H2-Q1-202ENSMUST00000105041 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Wdcp-202ENSMUST00000085793 1992 ntAPPRIS ALT2 TSL 2 BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Rpl23-201ENSMUST00000103146 1059 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Tmsb15b1-201ENSMUST00000113071 439 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Gm13453-201ENSMUST00000118708 357 ntBASIC12.42□□□□□ -0.42
Rnf40Q3U319 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC12.42□□□□□ -0.42
Rnf40Q3U319 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Gm22094-201ENSMUST00000158976 117 ntBASIC12.42□□□□□ -0.42
Rnf40Q3U319 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Gm7289-201ENSMUST00000168993 734 ntBASIC12.42□□□□□ -0.42
Rnf40Q3U319 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Gm27039-201ENSMUST00000182438 962 ntBASIC12.42□□□□□ -0.42
Rnf40Q3U319 Gm37005-201ENSMUST00000193281 1164 ntBASIC12.42□□□□□ -0.42
Rnf40Q3U319 4930533L02Rik-201ENSMUST00000194425 1160 ntBASIC12.42□□□□□ -0.42
Rnf40Q3U319 Gm44397-201ENSMUST00000195950 113 ntBASIC12.42□□□□□ -0.42
Rnf40Q3U319 Gm42303-201ENSMUST00000209960 1170 ntTSL 5 BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Gm21089-201ENSMUST00000215843 325 ntBASIC12.42□□□□□ -0.42
Rnf40Q3U319 Fmnl1-207ENSMUST00000218163 3824 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Gm35135-201ENSMUST00000219885 990 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Cdk7-205ENSMUST00000225990 1159 ntBASIC12.42□□□□□ -0.42
Rnf40Q3U319 Wdyhv1-206ENSMUST00000227142 786 ntBASIC12.42□□□□□ -0.42
Rnf40Q3U319 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Gm9797-201ENSMUST00000052902 613 ntBASIC12.42□□□□□ -0.42
Rnf40Q3U319 Gm20445-201ENSMUST00000061905 565 ntBASIC12.42□□□□□ -0.42
Rnf40Q3U319 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Olfr811-201ENSMUST00000076437 960 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Nod1-201ENSMUST00000060655 4315 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Tpd52l2-202ENSMUST00000069712 1799 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Rnf40Q3U319 4930593A02Rik-201ENSMUST00000181694 1437 ntTSL 5 BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Gm37057-201ENSMUST00000192624 1916 ntBASIC12.42□□□□□ -0.42
Rnf40Q3U319 Odf2l-204ENSMUST00000106192 2425 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Mageb4-201ENSMUST00000096378 2401 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Add2-204ENSMUST00000203366 3407 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Kif19a-201ENSMUST00000084368 3433 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Cacna1c-205ENSMUST00000112825 7577 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Kdelr1-201ENSMUST00000002855 1599 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Adgrl3-210ENSMUST00000119788 5394 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Gm13990-201ENSMUST00000151391 2701 ntTSL 5 BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Nxpe5-204ENSMUST00000161047 2379 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Extl3-201ENSMUST00000022550 5977 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Maged2-202ENSMUST00000112697 1851 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Lgr5-208ENSMUST00000173740 2508 ntTSL 5 BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Gm7964-201ENSMUST00000051522 1378 ntBASIC12.42□□□□□ -0.42
Rnf40Q3U319 Otud7b-202ENSMUST00000090785 8101 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Peg10-202ENSMUST00000176204 6667 ntAPPRIS P2 TSL 2 BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Rnf40Q3U319 1600014C10Rik-201ENSMUST00000067854 3143 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Rnf40Q3U319 Gm17029-203ENSMUST00000153443 2758 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 44.3 ms